Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02519 ATGATACCAACACCTCCCACCACCACCACCACCACAAACAATATGAACAACATCTGGGATGACAACTCCTCCGTCATGGAAGCTTTCATGACCACCTCTGACCTCTCTAGTTTCTGGCTTCCAACACCACATTCCGCAACTTCAACAACTGCACCACCAGTGCCTCCTCCATCACAACAGTCTATGTTCAATCAAGAAACTCTCCAACACCGTCTTCAAGCTCTTATCGAAGGAGCAAAAGAAAGCTGGACCTACGCGATTTTCTGGCAATCCTCTTATGATTACACCATGGCTACACCGCTGCTCGGCTGGGGTGATGGATATTATAAAGGCGAAGATGACAAAGGAAAACTGAAACGAGTTACGCCTCCAGAAGAACAAGCTCATCGTAGAAAGATTCTCCGTGAGCTTAATACGTTGATTTCTGGTGGTTCATCTGTCTCAGATGATGCCGTTGAGGAAGATGTCACCGACACTGAGTGGTTTTTTCTCACGTCGATGACTCAATCCTTTGTCAACGGCACCGGATCACTGAGTCAGGCTTATTTCAATTCAACCCCAGTGTGGATCACCGGGGCTGATAGGCTTTCCAATTCTGTCTGTGAACGGGCCCGTGAAGCACGGGCCCATGGATTTCAGACGTTGGTATGTATACCAACAATGTCTTCAAGCGGGGTGGTTGAGCTTGCTTCTACAGAAATGATTCCATACAACGCTGATCTAATGGAGAAGATTCGTGTTTTGTTTAATTTCAACAATCCTGAAACAGGTTCGTGGCCGTTGAATTCCATCACAACGAGCGAAAACGATCCTTCCTCGGTCTGGCTCAACGATCTCTCCGCCTCTACGGCCATTGAAATTCGAGATACCACCGTTAACACTGCCACTGTACCTGCCATGAACGCAACCATTTCTGCAAATGCAACAATCGGTAAAACATTACCGTTTGAAACAAATGGTTCAACCAGTACTCTAACGGAAACACCAACTGCAGTTAACTTTGCTCAGCGTCAGAATCAGAACAACCAGAACCAGAGCTTTTTTCTGAAGGAACTGAATTTTTCTGGTTCAATGAAACCAGAATCCGGCGAGATTCTGAGTTTCGGTGAAAGTAAAAAAAGTTCTTATATCACCGGAAATGGAACTTTCTTTTCTGGTCAGTCACAGTTCGTCGCCGGTGAAGAAAACAGAAAAAGAAAGTCTACTGTATCCAGAAGCAGCGTTGATGATGGAATGCTTTCGTTTACTTCCGGTGTAGTCTTACCGTCTTCAAATATGAAATCAAGCAGCAGAGGTGGAGGCGGAGATTCTGATCATTCAGATCTAGATGTTTCTGCGGTGAAGGAAGGTGAGAGCAGCAGAGTGGTAGAGCCAGGGAAGCGACCGAAGAAAAGAGGTCGAAAACCAGCTAATGGAAGAGAAGAACCATTGAATCATGTAGAAGCAGAAAGACAAAGAAGAGAAAAGCTCAACCAGAAATTCTATGCTCTACGTGCTGTGGTTCCAAATGTTTCTAAAATGGACAAAGCATCGTTGCTTGGCGACGCGATTTCTTATATAAATGAATTGAAATCGAAGCTACAAGGGCTGGATTCGTCAAAAGGTGAATTGGAGAAACAATTAGGTGCAACAAAGAAGGAATTAGAACTTGTTGCAAGCAAAAATCAAAATCCAATTCCATTAGATAAAGAAAAGGAGAAAACAACAAGCTCAACAAGCTCTTCTAAGTTAATTGACTTGGATATTGATGTGAAGATTATGGGTTGGGATGCTATGATTAGGATTCAATGCAGCAAGAAGAATCACCCTGCGGCGAAGTTGATGGCGGCGTTGAAAGAATTAGACCTTGATGTGAATCATGCTAGTGTGTCTGTTGTGAATGATTTGATGATTCAACAAGCTTCTGTTAACATGGGAAGTAGATTTTACACACAAGAACAACTTTCGTCTCTTCTTTCTTCCAAAATTGGTGATGCACAAGGAGATTGA 1989 0.4359 MIPTPPTTTTTTNNMNNIWDDNSSVMEAFMTTSDLSSFWLPTPHSATSTTAPPVPPPSQQSMFNQETLQHRLQALIEGAKESWTYAIFWQSSYDYTMATPLLGWGDGYYKGEDDKGKLKRVTPPEEQAHRRKILRELNTLISGGSSVSDDAVEEDVTDTEWFFLTSMTQSFVNGTGSLSQAYFNSTPVWITGADRLSNSVCERAREARAHGFQTLVCIPTMSSSGVVELASTEMIPYNADLMEKIRVLFNFNNPETGSWPLNSITTSENDPSSVWLNDLSASTAIEIRDTTVNTATVPAMNATISANATIGKTLPFETNGSTSTLTETPTAVNFAQRQNQNNQNQSFFLKELNFSGSMKPESGEILSFGESKKSSYITGNGTFFSGQSQFVAGEENRKRKSTVSRSSVDDGMLSFTSGVVLPSSNMKSSSRGGGGDSDHSDLDVSAVKEGESSRVVEPGKRPKKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLDSSKGELEKQLGATKKELELVASKNQNPIPLDKEKEKTTSSTSSSKLIDLDIDVKIMGWDAMIRIQCSKKNHPAAKLMAALKELDLDVNHASVSVVNDLMIQQASVNMGSRFYTQEQLSSLLSSKIGDAQGD 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02519 662 SMART finulus 480 529 IPR011598 GO:0046983
Mepo1g02519 662 PANTHER MYC 38 655 IPR045084 GO:0003700|GO:0006355
Mepo1g02519 662 MobiDBLite consensus disorder prediction 468 484 - -
Mepo1g02519 662 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 68 249 IPR025610 -
Mepo1g02519 662 MobiDBLite consensus disorder prediction 418 433 - -
Mepo1g02519 662 MobiDBLite consensus disorder prediction 434 459 - -
Mepo1g02519 662 CDD bHLH_AtAIB_like 471 547 - -
Mepo1g02519 662 Pfam Helix-loop-helix DNA-binding domain 478 523 IPR011598 GO:0046983
Mepo1g02519 662 Gene3D - 473 552 IPR036638 GO:0046983
Mepo1g02519 662 MobiDBLite consensus disorder prediction 418 484 - -
Mepo1g02519 662 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 474 523 IPR011598 GO:0046983
Mepo1g02519 662 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 477 543 IPR036638 GO:0046983
Mepo1g02519 662 Coils Coil 520 540 - -
Mepo1g02519 662 MobiDBLite consensus disorder prediction 553 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02519 Mepo-Chr1 26436464 26438971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02519 17 657 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 50.525 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo1g02519 bHLH-MYC_N 2.2e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02519 K13422 - gmx:100790854 731.48