Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02509 ATGTCTCCGCCACTGCTGCTTCCTGAAGAGGAAGGGCAGAGCAACCCCTCAACAGTAGCATCTGCATCTCCACAATCCTTGGACCGTTTGTCTCAAACTGCAGCTGGGTTGAAAGAACGCAATTACCTCGGATTGTCTGATTGCTCATCGGTTGACAGTTCTACTGTCCCAAGCTTGTCTGATGAGAAAAAAGAGAACCTAAATTTGAAAGCGACAGAGTTAAGGCTCGGACTTCCTGGATCTCAGTCACCTGAAAGGGATCTTGATCTTTTTCCGTTGAACTCAACAAAACTTGATGAGAAACCACTTTTCCCTTTGCTTCCCACTAAAGATGGAATCTGCTTGTTGTCCCAAAAGACCGTCGTTTCAGGCAACAAAAGAGGTTTTGCCGACACACTGGAAGTGTTTCATGAGGCAAAATATACTGGTAATACTCGCGTAAACATACTGCTTTCGCCGAGACCTTCTGGAGCTCAACCTACTACAATTAAAGAAATGCCAAAGAAGGTGGTACAAGAGAGCCCTTGTACAGCAAATGGAACTGGAGCTCCCATCAGTGGCAGTGCACCGGCTGCTAAAGCACAAGTTGTTGGTTGGCCTCCTATTAGATCATTTAGGAAAAACTCACTGGCAACCACTTCAAAGAACAATGACGAAGTGGATGGAAAACCTGGTGCAGCTGCACTATTTGTGAAGGTTAGCATGGATGGCGCTCCTTATCTTAGGAAGGTAGATCTAAGAAACTATACAACATACCAGGAACTGTCGTCTGACCTTGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGTGGTTCGCATGGAGCTCCAGGGAGAGAAATGTTGAGTGAGAGCAAATTGAAGGACTTCCTGCATGGTTCTGAATATGTGGTCACTTATGAAGATAAAGATGGTGACTGGATGCTTGTAGGAGATGTACCATGGGACATGTTCATCGACACATGCAAAAGACTGAAAATCATGAAGGGTTCTGATGCAATTGGCTTAGCTCCAAGGGCCATGGAAAAATCCAAGAGCAGGAGCTAG 1047 0.4527 MSPPLLLPEEEGQSNPSTVASASPQSLDRLSQTAAGLKERNYLGLSDCSSVDSSTVPSLSDEKKENLNLKATELRLGLPGSQSPERDLDLFPLNSTKLDEKPLFPLLPTKDGICLLSQKTVVSGNKRGFADTLEVFHEAKYTGNTRVNILLSPRPSGAQPTTIKEMPKKVVQESPCTANGTGAPISGSAPAAKAQVVGWPPIRSFRKNSLATTSKNNDEVDGKPGAAALFVKVSMDGAPYLRKVDLRNYTTYQELSSDLEKMFSCFTLGQCGSHGAPGREMLSESKLKDFLHGSEYVVTYEDKDGDWMLVGDVPWDMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02509 348 ProSiteProfiles PB1 domain profile. 228 332 IPR000270 GO:0005515
Mepo1g02509 348 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 67 335 IPR003311 GO:0005634|GO:0006355
Mepo1g02509 348 MobiDBLite consensus disorder prediction 1 33 - -
Mepo1g02509 348 Gene3D - 224 342 - -
Mepo1g02509 348 MobiDBLite consensus disorder prediction 11 32 - -
Mepo1g02509 348 SUPERFAMILY CAD & PB1 domains 228 329 - -
Mepo1g02509 348 FunFam Auxin-responsive protein 223 340 - -
Mepo1g02509 348 Pfam AUX/IAA family 72 339 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02509 Mepo-Chr1 26340274 26345775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02509 232 338 B3 DNA Binding Superfamily AT4G23980 30.841 2.84e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mepo1g02509 AUX_IAA 6e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02509 K14484 - gmx:100500373 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01412 5 14724331 14730074 Mepo1g02509 1 26340274 26345775 PCT