Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02485 ATGCAGTTGGTTATTGACAATGGCATTGTTTCTGTGACTTTGTCAAGACCCGAGGGGCACGTCATTGCAATATCGTATAATGGAATTGACAACATTCTTGAATCTGAAAACGAAGAAGATGATAGAGGGTACTTCGACGTTGTTTGGAATGAAGTAGGAAAGCCTAGCACCTTCCAAAGAATCCATGGAACAAACTTTTCAGTTATAGCAGCTGATGAGGATATGGTGGAGATTTCATTTTCAAGATCATGGACATCTTCCATGAGTGGCAAAGATGTCCCTATAAACATAGACAAAAGATACATTTTTAGAAGTGGTGATTCAGGATTTTATTCATATGCAATATTTGATCGCCCTGAAGGAATGCCAGCAGTTGAGGTTGATCAAATTAGATATGTTTTCAAACTCGATCAACATAGGTTCAAGTACATGGCATTATCTGATACAAGGCAAAGAAACATGCCAACAATGAGAGATAGAGACACAGGTCAAGTACTTGCTTACAAAGAAGCAGTTCTATTAACAAAACCAATTAACCCACAATTTAGAGGAGAGGTGGATGATAAATATCAATACTCATGTGAGAACACAGATAACACTGTTCATGGTTGGATTGATTTTGATTCTGATGAACCTGTTGGTTTTTGGATGATAACACCTAGTAATGAATTTCGTAATGGTGGACCCATTAAGCAAGATCTTACTTCTCATGTTGGACCCATCACTCTCTCGATGTTTGTGAGCACACACTATGCTGGAAAGGAAGTAACTATGGCATTTGAAGAAGGGGAGACTTATAAAAAGGTTTTTGGGCCTGTATTTGTGTACCTTAACTCTGATTCAAGCAAGAATGATACTGCAACTCTCTGGTCAGATGCTGTACAACAGTTATCCAAGGAAGTCCAAAGTTGGCCTTATGATTTTCCTCAATCACAAGATTATATTCCACCTAATCAACGTGGAGCAGTATTTGGAAGATTATTAGTCCAAGATTGGTACTTCAAAGGAGGGAAATTTCAGGGCACTAATGCTTATGTGGGTCTAGCTTTGCCTGGAGATGCAGGATCATGGCAAAGAGAAAGCAAGGGCTATCAATTTTGGACTCGATCTGATGCCAAAGGATACTTTAAAATAAATAATATTGTGCCAGGTGATTATAATTTGTATGGTTGGGTCCCTGGATTCATTGGTGATTACAAATATAATGGTACAATCACTATTACCCCAGGAGGAGTTATAAACTTAAATTATCTTGTATATAATCCTCCAAGAAATGGACCAACCATTTGGGAAATTGGGATTCCAAATCGCTTGGCTTCAGAATTTCATGTACCTGATCCTTACCCTACTCTCATGAACAAATTATACACCGAACAACGAATAGACAAGTTTAGGCAATATGGGTTGTGGGAACGTTACACTGATATGTATCCAAATGATGATCTTATTTACACTGTTGGTGTTAATAAGTACAGAGATTGGTTTTATGCTCATGTTACAAGAAGCAAAGGAAATAAAACATATGAACCAACAACATGGCAAATTATATTTGAACATGAACAAGACATAATCAGTGGAAACTACACACTACAACTGGCCTTGGCTAGTGCTGCTGATGCTGACCTACAGGTACGGTTCAATGATCCTAGCATATATCCACCTCATTTTGCCACAGGGCACATAGGAGGAGACAATGCCATAGCAAGACATGGAATTCATGGATTGCATTGGTTATTCAGCATTGATGTGCCAAGTGATCTTCTTGTGAAAGGAAAGAACATCATCTATCTGAGACAATCAAAAGCTCTTAGTCCATTTCAAGGAGTTATGTATGATTATATCCGTTTAGAACGACCACCTAAAACTTGA 1869 0.382 MQLVIDNGIVSVTLSRPEGHVIAISYNGIDNILESENEEDDRGYFDVVWNEVGKPSTFQRIHGTNFSVIAADEDMVEISFSRSWTSSMSGKDVPINIDKRYIFRSGDSGFYSYAIFDRPEGMPAVEVDQIRYVFKLDQHRFKYMALSDTRQRNMPTMRDRDTGQVLAYKEAVLLTKPINPQFRGEVDDKYQYSCENTDNTVHGWIDFDSDEPVGFWMITPSNEFRNGGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFEEGETYKKVFGPVFVYLNSDSSKNDTATLWSDAVQQLSKEVQSWPYDFPQSQDYIPPNQRGAVFGRLLVQDWYFKGGKFQGTNAYVGLALPGDAGSWQRESKGYQFWTRSDAKGYFKINNIVPGDYNLYGWVPGFIGDYKYNGTITITPGGVINLNYLVYNPPRNGPTIWEIGIPNRLASEFHVPDPYPTLMNKLYTEQRIDKFRQYGLWERYTDMYPNDDLIYTVGVNKYRDWFYAHVTRSKGNKTYEPTTWQIIFEHEQDIISGNYTLQLALASAADADLQVRFNDPSIYPPHFATGHIGGDNAIARHGIHGLHWLFSIDVPSDLLVKGKNIIYLRQSKALSPFQGVMYDYIRLERPPKT 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02485 622 Gene3D - 1 297 IPR014718 GO:0030246
Mepo1g02485 622 SUPERFAMILY Galactose-binding domain-like 425 617 IPR008979 -
Mepo1g02485 622 Pfam Polysaccharide lyase family 4, domain II 342 414 IPR029413 -
Mepo1g02485 622 CDD RGL4_N 1 286 - -
Mepo1g02485 622 Pfam Polysaccharide lyase family 4, domain III 428 616 IPR029411 -
Mepo1g02485 622 CDD RGL4_C 430 617 - -
Mepo1g02485 622 SUPERFAMILY Starch-binding domain-like 316 418 IPR013784 GO:0030246
Mepo1g02485 622 Gene3D - 316 417 - -
Mepo1g02485 622 Gene3D - 425 617 - -
Mepo1g02485 622 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 620 - -
Mepo1g02485 622 FunFam Rhamnogalacturonate lyase B 316 415 - -
Mepo1g02485 622 CDD RGL4_M 319 416 IPR029413 -
Mepo1g02485 622 Pfam Rhamnogalacturonate lyase family 2 186 IPR010325 -
Mepo1g02485 622 SUPERFAMILY Galactose mutarotase-like 4 284 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02485 Mepo-Chr1 26054045 26060783 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02485 2 619 Polysaccharide Lyase AT1G09890 56.501 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02485 K18195 - gmx:100776664 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01442 5 15105945 15112022 Mepo1g02485 1 26054045 26060783 PCT