Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02482 ATGATTGTGAAATTCAGCTTCTTGTTATGTGCTTGTTCTGAGAAGACATCATTAAGAGGAGGTTCAAAGAAGATAAATAGCCTGGGATCCAAAGTTGTAGTCAAGCTGAATACAGAAAGCAAACAACAGTTGGTTGTTGACAATGGCATTGTTTCGGTCACTTTGTCAAAGCCGGAGGGATACCTCATTGGGCTATCATATAATGGAATCGACAATATTCTTGAATCTGAATACAAAGAACATGCTAGAGGGTATGTATCTACTTTATATGAAACCATATGTATTGAATATACTAATTTACAATTGAAACCATGTTGCAGAATCCATGGTACAAAATTTTCAGTTATAGCAGCTACTGAGAATATGGTGGAGGTTTCATTTTTAAGATCATGGACATCTTCCATGAGTGGCACAAATGTTCCCATAAACATCGACATCAGATACATTTTCAGAAGTGGTGATTCAGGATTTTATTCATACGCAATATTTCATCGCCATGAAGGAATGCCAGCAGTTAACGTTGATCAAATTAGATTTGTTTTCAGACTCAATAAAGACAGGTTCAACTACATGGCTATATCGGATACAAGGCAAAGAAGAATGCCAACAATGAGAGATGTTAAAACAGGTCAAGTCTTAGCTTACCCTGAAGCAGTTCGATTAACCAAACCACATAACCCACAATTTACAGGAGAGGTGGATGATAAATATCAATACTCATGTGAGAACATAAATAACACTGTTCATGGATGGATTAGTCTTGATTCTGATGAACCGGTGGGTTTCTGGATGATAACACCAAGTAATGAGTTTCGTAACGGTGGACCAATTAAGCAAGACCTTACTTCTCATGTTGGACCTATCACCCTCTCAATGTTTGTGAGTCCCCACTATGCTGGAAAGGATGTAACCATGGAATTTCAAGAAGGGGAGACTTATAAAAAGGTGTTTGGACCTGTATTTGTCTACCTTAACACTATTTCAAGTGGGAATGATAAACTATCCCTCTGGTCAGATGCGGTGCAACAGTTATCTAAGGAAGTCCAAAGTTGGCCTTATGATTTTCCTCAATCACAAGATTATTTTCCACCTAATCAAAGGGGGGAAGTATTTGGAAGATTACTAGTCCAAGATTGGTACTTCAAAGGAGGAAGATTTCAATATACTAATAATGCTTATGTGGGTCTAGCTTTACCTGGAGATGCAGGATCATGGCAAAGAGAAAGTAAGGGCTATCAATTTTGGACTCGAGCTAATGCCAAGGGATACTTTAAAATAAATAATGTTGTGCCAGGTGACTATAATTTGTATGCTTGGGTCCCTGGATTTATTGGTGATTACAAATATAATGCTACAATCACTATCACCCCAGGAGGAGTCATAAAATTAAATTCACTTGTATATAATCCTCCAAGAAATGGACCAACCATTTGGGAAATTGGTATCCCAGATCGATTGGCTTCAGAGTTTCATGTACCAGACCCTTACCCTACTCTCATGAACAAATTATACACCAAAAAACACAGTGACAAGTTTAGGCAATATGGATTGTGGAAACGTTACAGGGATATATATCCATATGATGATCTTGTTTACACTGTGGGTGTTAACAATTATAGGGATTGGTTTTTTGCTCATGTTACAAGCAGAAGCAAAGGAAATAAGACATATGAACCAACAACATGGCAGATTATATTTGAACATAAAAATGACATAATCAGTGGAAACTACACACTGCAACTGGCGTTGGCTAGTGCCGCTGATGCTGATCTACAGGTTCGTTTCAATGACCGCAGCAAAGATCCACCTCATTTTGCCACGGGGCGTATAGGAAGAGACAATGCCATAGCAAGGCATGGAATTCATGGATTGTATCGGTTGTTCAGCATTAATGTGTCCGGTAACCTTCTTTTGAAAGGAAAAAACATCATCTACCTGAGGCAGTCCAAAGCCGATACTCCTTTCCAAGGAGTTATGTACGATTATATTCGTTTAGAACGACCACCAACAACTTGA 2016 0.3844 MIVKFSFLLCACSEKTSLRGGSKKINSLGSKVVVKLNTESKQQLVVDNGIVSVTLSKPEGYLIGLSYNGIDNILESEYKEHARGYVSTLYETICIEYTNLQLKPCCRIHGTKFSVIAATENMVEVSFLRSWTSSMSGTNVPINIDIRYIFRSGDSGFYSYAIFHRHEGMPAVNVDQIRFVFRLNKDRFNYMAISDTRQRRMPTMRDVKTGQVLAYPEAVRLTKPHNPQFTGEVDDKYQYSCENINNTVHGWISLDSDEPVGFWMITPSNEFRNGGPIKQDLTSHVGPITLSMFVSPHYAGKDVTMEFQEGETYKKVFGPVFVYLNTISSGNDKLSLWSDAVQQLSKEVQSWPYDFPQSQDYFPPNQRGEVFGRLLVQDWYFKGGRFQYTNNAYVGLALPGDAGSWQRESKGYQFWTRANAKGYFKINNVVPGDYNLYAWVPGFIGDYKYNATITITPGGVIKLNSLVYNPPRNGPTIWEIGIPDRLASEFHVPDPYPTLMNKLYTKKHSDKFRQYGLWKRYRDIYPYDDLVYTVGVNNYRDWFFAHVTSRSKGNKTYEPTTWQIIFEHKNDIISGNYTLQLALASAADADLQVRFNDRSKDPPHFATGRIGRDNAIARHGIHGLYRLFSINVSGNLLLKGKNIIYLRQSKADTPFQGVMYDYIRLERPPTT 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02482 671 CDD RGL4_C 478 666 - -
Mepo1g02482 671 SUPERFAMILY Galactose-binding domain-like 473 666 IPR008979 -
Mepo1g02482 671 CDD RGL4_M 366 466 IPR029413 -
Mepo1g02482 671 Gene3D - 36 339 IPR014718 GO:0030246
Mepo1g02482 671 Pfam Polysaccharide lyase family 4, domain II 390 462 IPR029413 -
Mepo1g02482 671 SUPERFAMILY Starch-binding domain-like 362 465 IPR013784 GO:0030246
Mepo1g02482 671 SUPERFAMILY Galactose mutarotase-like 38 328 IPR011013 GO:0003824|GO:0005975|GO:0030246
Mepo1g02482 671 Pfam Polysaccharide lyase family 4, domain III 476 665 IPR029411 -
Mepo1g02482 671 FunFam Rhamnogalacturonate lyase B 363 463 - -
Mepo1g02482 671 Gene3D - 473 666 - -
Mepo1g02482 671 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 35 669 - -
Mepo1g02482 671 Gene3D - 364 465 - -
Mepo1g02482 671 Pfam Rhamnogalacturonate lyase family 30 233 IPR010325 -
Mepo1g02482 671 CDD RGL4_N 37 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02482 Mepo-Chr1 26007173 26015628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02482 44 670 Polysaccharide Lyase AT1G09910 54.173 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02482 K18195 - gmx:100776664 1006.9