Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02438 ATGTTCACTTCGATCCCATTGTTTGTTATCTTTTCAAGCCTTTGCCTGTTATCTAAGCAGATGGAAACTAATGAAAATGAGGAAGGGGTAGTCATGGCTAATATTACTGAACCAACAAGTTACGTTGAAACAACTAAAACCTCGAACCATCATGATGAAGAAACCCTAATGAATTCTCAAAGCAATAGCTTTGAAGAAAAGTTCAAAGAGTGTAGAAAGAATCACGCTTCCAGCATTGGAGGCTACGCTCTTGATGGTTGTGGCGAGTTTTTACCCGCTGGAATTGAAGGAACCATCGAATTTTTCAAATGTGCTGCGTGTAATTGTCACCGAAATTTTCATCGGAGAGAAAATGGTGTTGTTAATGAAGAGAATATTTCCCTTCCTTTTAACAACCCCCGTTTCCCTCAGCCGACTCCCTTCTCGACGGTTTTTCAAACTCCAACAGGTTACCATCATGTGACTGGGACTTCTAGGGGGGCAACTACTTCTCTTCCTTCTTCAGTTGTTCATGATGAGGCCCACTTTCCAAGGGGTGATCTTGGAGAAGGTGTTGTTGAGCCAATCTATCATGGTGATACTTATAGTGGTGGAGAAGGGTCGTCAAAATCAAAGAGATTCCGATCCAAGTTCACTCATTATCAAAAGGAAAGGATGCTCGGTTTTGCTATGAAATCGGGTTGGAAGATTCACAAGCAAGATGAAAATGCAGTTGAACAATTTTGTAACGAGATTGGTGTAAAGTGTAAAACTTTTAGGGTGTGGATGTATAACAACAAACACACCCTTGGAAATAAGCACTAG 804 0.4092 MFTSIPLFVIFSSLCLLSKQMETNENEEGVVMANITEPTSYVETTKTSNHHDEETLMNSQSNSFEEKFKECRKNHASSIGGYALDGCGEFLPAGIEGTIEFFKCAACNCHRNFHRRENGVVNEENISLPFNNPRFPQPTPFSTVFQTPTGYHHVTGTSRGATTSLPSSVVHDEAHFPRGDLGEGVVEPIYHGDTYSGGEGSSKSKRFRSKFTHYQKERMLGFAMKSGWKIHKQDENAVEQFCNEIGVKCKTFRVWMYNNKHTLGNKH 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02438 267 Pfam ZF-HD protein dimerisation region 67 118 IPR006456 -
Mepo1g02438 267 NCBIfam homeobox domain, ZF-HD class 205 260 IPR006455 -
Mepo1g02438 267 Gene3D - 191 265 - -
Mepo1g02438 267 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 117 IPR006456 -
Mepo1g02438 267 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 46 263 - -
Mepo1g02438 267 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 67 117 IPR006456 -
Mepo1g02438 267 SUPERFAMILY Homeodomain-like 190 263 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02438 Mepo-Chr1 25410254 25411244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02438 67 266 ZF-HD Transcription Factor Family AT2G02540 39.512 5.10e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mepo1g02438 ZF-HD_dimer 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02438 - - mtr:11410439 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g01521 5 15894048 15895383 Mepo1g02438 1 25410254 25411244 PCT