Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02336 ATGGATGGTTTTAGGGATCGGGAGATTGACATGTACCCGGAGTATGATAAGTTTCGAGATGGTTATACCAGCATTGAAAACTATGGTGATCGAGGCTATGACAAACCTGCCAGGTTTGCAGGGCATGACCGTGATGATTATGCATATGATGATTATGGCCACAAGTCCCGTGTTTCCCACCATCGGAGGGAGGATAGCCACGAGAGGGATTACGATCATGGTCGGCATAGTTATGATTCTGATTATGAAAGAGATGGCAGAAGAGATAGTAATTCGAGGCGACGTGAATCACGTGATCGAGAACGAGACAAGAGATGTTTTAGTCGGGAAAAAGATCCAAGTCCACACAGGAAACATGAGCGTTCGCGATCGCGTTCACGATCCCATTCTCGATCTCGGTCTCACTCCCGTTCCCATTCTCACTCTCGTTCCCGTTCGCAATCTCGTGGATATGATGATCATCCAAAATCTAGGTCTCCTCGAGGTCGAAGCCGTAGTAGAAGTTATCGTGAAGACAACTATGCTGACAATCGATATGATAGAAGTGAAAGACGCAGAGACCATGATGATAAACGTCAGAGGGAGCATTATTCCGTGGCTCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACGACTGAAGAAGATCTATACCAAATCCTTGCGGAATGGGGTCCCCTTCGACATGTTCGTGTTATAAAAGAGAGAAGTTCTGGCATCTCTCGTGGATTCGCATTTATTGATTTTCCTTCCGTGGGAGCTGCACAAGGAATGATGGACAAACTCGGAGGTGATGGTCTTGTTGTTGATGGCAGAAAACTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTGCAGGTTCAGATGGAGCTATGAAACCAGGTCACAGTCATAAGAGCATTACAATACCATCTGATTGGATGTGCATTATATGTAGCTACATTAATTTTGCACGCCGGACTTCCTGCTATCAGTGTAATGAACCACGCACAGATGATGCTCCTGCAGCAGATATTTCATTATCAAATTCAACATCCTTAGGAAAGAAAGGTTTAGAGGCGGGTCCAACTCATGTATTGGTTGTCCGTGGATTGGATGAAAATGCCGATGAAGAAATGCTCCGCTATGAGTTTTCCAAGCATGCTCCAATCAAGGATCTACGTCTTGTGAGAGACAAGTTCACTCACGTCTCAAGAGGATTTGCATTTGTACATTTTTATTCGGTAGAGGATGCTACCAAAGCTCTTGACTTAACAAATGGAACGGCCCTTGAGAAGAATGGGCAGATTCTAAGAGTAGCATATGCAAAAAGCATACTGGGGCCTGGATCAGGGGCGTCAGGAACTTCACAATCAAGCAGTCTTGCAGCTGCAGCTATTGAGGCTGCAACATTTTCCCAACAGTATGATTCTGTCGGATGGGCTCCCAAAGAATACAATCCAGATGACAAACAATCTAATGGTCCTGAGCAGCCTGGTACTGATGTTGGTGCACCACAATCAGGCTTTGTTTGGGACGAAGCATCTGGTTATTACTATGATGCTACTTCTGGGTTTTATTATGATGGGAATACTGGTCTATACTATGATGGTAATAATGGGATTTGGTATTCATATGACCACCATACTCAGCAGTACATCCCATGCACCGATCAAAATCAGAATAAAACATCTAATAACGAGTCTGAACCTTCTAAGGCATCTGATGGTTCTAGCACTAAAAAAGTGGTGATTTCTGCACCAGCTACTATTGTTACTTCAAACGAGAAGCCAGCTTCACTAGCAGATGCCGTCCAGGCTGCTGCAGCTGCTGCTTTAGCTGCAGAGAAGAAAGAGAAAGAAAGATCAAAGGAGATAAAACTTGCTTCAAAAAGCAGTATTCTAGCAAACAAGAAAAAAATGAACAATGTGCTGTCAATGTGGAAGCAGAGGAGTCATGAGGGACAAGCTACTCGTGTGGCACTGGAGGACAATCAGTTATCTGGTTCTGCTGACGATAGGTCATATTCTTCTGCACCTTCTGCAAAGAACAAGTTAAAAACTGAGACAGTAGCAAGGGAAATTAATGCGTCTAATCTGGGAGGTCACACAACTGCACAGGTTGTCGCTACTGACTCCCAGGCACAGCCACGACCCTTCAGTAATAGCCTTGGGGGCACTCTGATGGGGGTTATTAGGGGATCAGGAAGAGGTGTTGTTAAATCAGATACTTCTTATTCTGGCTCTACGTCTGCCACACCATCTATGTCCGCTTCATCTTCTGCAAATGTTGATACACAAACATTTGCTACTCCCTTTAAAACAGATGTCTCTTCCCTGGGTTCATATACACCATCTGCGTCTGTTGGAAGTGGACGAAGAAGGTTTTCGGAAATGCCTCTTTCTGCTTCAACTCATAAGGAACAGTCCCAAACAACCTATAGGGATCGGGCAGCTGAGAGAAGAAATTTGTATGGCTCGTCATCTTCAGTTGGCAATGATTTGGCTGACCTCGAAATTGGGGATTCAACTCGCGATTTTGCATCAAGGAGGAGTGATACAATGCCATTCCCTCCCGGGGTTGGTGGAGGACGCGCAGTTGGTGATGTCAACCTCGATACTTTTGAGGTGATTACAACAGACAAAGCGATTGATGAAAAGAATGTTGGTAATCGGATGCTTCGCAACATGGGCTGGCAGGAAGGCTTGGGGCTAGGAAAGGATGGAAGTGGAATGATTGAGCCTGTCCAAACACAAGCCATGGAAAATAGAGCAGGACTTGGAAGTCAGCAGAAAAAGTTGGACCCTAGCCTTGAGGTGCAGGCAGGCGATAGCTACAAGATGCTTATTCATAAAAAAGCACTTGCCAGGTTTCGGGAAATGTAG 2871 0.4493 MDGFRDREIDMYPEYDKFRDGYTSIENYGDRGYDKPARFAGHDRDDYAYDDYGHKSRVSHHRREDSHERDYDHGRHSYDSDYERDGRRDSNSRRRESRDRERDKRCFSREKDPSPHRKHERSRSRSRSHSRSRSHSRSHSHSRSRSQSRGYDDHPKSRSPRGRSRSRSYREDNYADNRYDRSERRRDHDDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSVGAAQGMMDKLGGDGLVVDGRKLFFEYSSKPTGGAGSDGAMKPGHSHKSITIPSDWMCIICSYINFARRTSCYQCNEPRTDDAPAADISLSNSTSLGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALDLTNGTALEKNGQILRVAYAKSILGPGSGASGTSQSSSLAAAAIEAATFSQQYDSVGWAPKEYNPDDKQSNGPEQPGTDVGAPQSGFVWDEASGYYYDATSGFYYDGNTGLYYDGNNGIWYSYDHHTQQYIPCTDQNQNKTSNNESEPSKASDGSSTKKVVISAPATIVTSNEKPASLADAVQAAAAAALAAEKKEKERSKEIKLASKSSILANKKKMNNVLSMWKQRSHEGQATRVALEDNQLSGSADDRSYSSAPSAKNKLKTETVAREINASNLGGHTTAQVVATDSQAQPRPFSNSLGGTLMGVIRGSGRGVVKSDTSYSGSTSATPSMSASSSANVDTQTFATPFKTDVSSLGSYTPSASVGSGRRRFSEMPLSASTHKEQSQTTYRDRAAERRNLYGSSSSVGNDLADLEIGDSTRDFASRRSDTMPFPPGVGGGRAVGDVNLDTFEVITTDKAIDEKNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKALARFREM 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02336 956 CDD OCRE_SUA_like 499 551 IPR035623 -
Mepo1g02336 956 SMART rrm1_1 361 436 IPR000504 GO:0003723
Mepo1g02336 956 SMART rrm1_1 204 279 IPR000504 GO:0003723
Mepo1g02336 956 Gene3D - 303 335 - -
Mepo1g02336 956 MobiDBLite consensus disorder prediction 15 200 - -
Mepo1g02336 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 266 IPR000504 GO:0003723
Mepo1g02336 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 362 427 IPR000504 GO:0003723
Mepo1g02336 956 MobiDBLite consensus disorder prediction 476 502 - -
Mepo1g02336 956 CDD RRM1_RRM2_RBM5_like 358 438 - -
Mepo1g02336 956 ProSitePatterns Zinc finger RanBP2-type signature. 309 328 IPR001876 -
Mepo1g02336 956 SUPERFAMILY RNA-binding domain, RBD 358 445 IPR035979 GO:0003676
Mepo1g02336 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 283 IPR000504 GO:0003723
Mepo1g02336 956 PANTHER RNA-BINDING PROTEIN 88 954 - -
Mepo1g02336 956 SMART G-patch_5 879 925 IPR000467 GO:0003676
Mepo1g02336 956 MobiDBLite consensus disorder prediction 145 197 - -
Mepo1g02336 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 360 440 IPR000504 GO:0003723
Mepo1g02336 956 Gene3D - 166 302 IPR012677 -
Mepo1g02336 956 SUPERFAMILY Ran binding protein zinc finger-like 302 335 IPR036443 -
Mepo1g02336 956 MobiDBLite consensus disorder prediction 120 144 - -
Mepo1g02336 956 MobiDBLite consensus disorder prediction 735 758 - -
Mepo1g02336 956 ProSiteProfiles Zinc finger RanBP2 type profile. 305 334 IPR001876 -
Mepo1g02336 956 Pfam OCRE domain 502 550 IPR041591 -
Mepo1g02336 956 ProSiteProfiles G-patch domain profile. 881 927 IPR000467 GO:0003676
Mepo1g02336 956 SUPERFAMILY RNA-binding domain, RBD 120 281 IPR035979 GO:0003676
Mepo1g02336 956 MobiDBLite consensus disorder prediction 31 119 - -
Mepo1g02336 956 SMART zf_4 307 331 IPR001876 -
Mepo1g02336 956 Gene3D - 341 465 IPR012677 -
Mepo1g02336 956 MobiDBLite consensus disorder prediction 551 576 - -
Mepo1g02336 956 Pfam G-patch domain 882 923 IPR000467 GO:0003676
Mepo1g02336 956 MobiDBLite consensus disorder prediction 647 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02336 Mepo-Chr1 24094765 24102152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02336 202 424 Eukaryotic Initiation Factors Gene Family AT2G36660 25.498 1.75e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02336 K13094 - gmx:100777686 1489.94