Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02235 ATGCCGAAAGTTAAAGCTGATTCCAAACCCGCTGATAACCGCTTGAAGCGCAAAGGTGCTGGAGCTGGAAGGAAACAGACGAAGAAAGCAGCGAAGGATCCCAACAAGCCAAAGAGACCTCCAAGTGCTTTCTTCGTTTTCATGTCTGATTTTAGAGAACAGTACAAGAAAGATCATCCTAACAACAAATCCGTTGCCGCTGTCGGAAAAGCTTGCGGTGAAGCATGGAAATCGATGTCTGAAGAAGACAAGGCTCCTTATGCTGCTAGGGCATTGAAGAAGAAAGAAGAGTATGAGGTTGCTACACAAGCATACAACAAGAAACTGGAGGGAAAAGACGAGGAAGATGGTTCTGACAAGTCAAAATCCGAAGTCAATGATGAGGATGAAGATGAGGAGGATGAGGATGATGATGATGAAGATGATGATTGA 432 0.4444 MPKVKADSKPADNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVAAVGKACGEAWKSMSEEDKAPYAARALKKKEEYEVATQAYNKKLEGKDEEDGSDKSKSEVNDEDEDEEDEDDDDEDDD 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02235 143 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Mepo1g02235 143 MobiDBLite consensus disorder prediction 1 42 - -
Mepo1g02235 143 Gene3D High mobility group box domain 21 132 IPR036910 -
Mepo1g02235 143 MobiDBLite consensus disorder prediction 104 143 - -
Mepo1g02235 143 SUPERFAMILY HMG-box 24 108 IPR036910 -
Mepo1g02235 143 CDD HMG-box_AtHMGB1-like 38 98 - -
Mepo1g02235 143 MobiDBLite consensus disorder prediction 125 143 - -
Mepo1g02235 143 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Mepo1g02235 143 SMART hmgende2 36 107 IPR009071 -
Mepo1g02235 143 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 138 IPR031061 -
Mepo1g02235 143 MobiDBLite consensus disorder prediction 104 124 - -
Mepo1g02235 143 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02235 Mepo-Chr1 22957788 22959372 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mepo1g02235 HMG_box 8.6e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02235 K25507 - gmx:100499992 199.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g02235 1 22957788 22959372 Mepo1g02235 1 22957788 22959372 ECH