Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02230 ATGGGTCTCTGTTTTTCCCTTCTCCACCCCTCCTCTGCACCCCCTCAATCTTCTTCCTTCAACAGACCTCTTTCTTCAGGTTCAACAAGCACTGTTGGATTCTCAGCAACTACAAGCAGTGCTGGAAGAAGCCAATTCTCTGAAGTAGCAAGTGGAAGCATTGATGATACTACTGAAGGAGGGTATCTTACTTTTCCTTCACCAAATGGTCAAATTCTTGAAAGACCAAATTTGAAGGTTTTTGCTTTTATTGAATTGAAAGCTGCTACAAAAAGCTTCAAATCTGATACATTACTTGGTGAAGGTGGTTTTGGAAAAGTTTATAAAGGTTGGTTAGATGAGAAAACACTTTGTCCTTGTAAAGCTGGTTCTGGAATGGTTGTTGCTATCAAAAAATTGAATTCTGAAAGTACTCAAGGTTTTCAAGAATGGCAGTCAGAAGTTAACTTCTTAGGAAGGCTTTCTCACCCAAACTTGGTGAAGCTATTAGGTTACTGTTGGGACGATGACGAGCTTCTTCTTGTGTACGATTTCATGCCAAAAGGAAGTCTGGAGAATCATCTCTTCAGAAGAAATCCTAACATTGAACCACTTTCTTGGAACACAAGAATCAAAATAGCTATTGGTGCAGCTCGTGGTTTGGCTTTCTTGCATGATTCAGCACAGCAAGTCATATACAGAGATTTTAAGGCTTCAAATATACTCCTTGATGGGAGTTACAATGCAAAAATCTCAGATTTTGGATTAGCTAAATTGGGGCCTTCTGGGGGACAATCACATGTAACTACCAGGGTCATGGGGACTTATGGTTATGCTGCTCCAGAATACATTGCAACAGGGCACTTGTATGTGAAGAGTGATGTATATGGCTTTGGTGTGGTGCTGTTAGAAATCTTAACAGCCATGAGGGCATTGGACACAAAGAGGCCAACAGGACAACAAAACCTAGTTGAATGGGTGAAACCTTTTCTGTCAAATAAGAAAAAATTGAAAGGCATAATGGATGCTAGAATAGAAGGACAATACTCACCAAAGGCAGCAGTACAAGCAGCAGCACTTTCTCTAAAGTGCTTAGAAAATGACCCTAAACAACGTCCTTCTATGAAAGAAGTACTTGAGTCATTGGAAGCTATTGAAGCAATTCAGGTCAAAACCAAAAGATCCAACAACAATTCTCATCAACCTCCAGTTCTTCAAGCTGCTAGGCACCAGAGAGTTGTGAAAGTATAA 1230 0.4024 MGLCFSLLHPSSAPPQSSSFNRPLSSGSTSTVGFSATTSSAGRSQFSEVASGSIDDTTEGGYLTFPSPNGQILERPNLKVFAFIELKAATKSFKSDTLLGEGGFGKVYKGWLDEKTLCPCKAGSGMVVAIKKLNSESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWDDDELLLVYDFMPKGSLENHLFRRNPNIEPLSWNTRIKIAIGAARGLAFLHDSAQQVIYRDFKASNILLDGSYNAKISDFGLAKLGPSGGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTAMRALDTKRPTGQQNLVEWVKPFLSNKKKLKGIMDARIEGQYSPKAAVQAAALSLKCLENDPKQRPSMKEVLESLEAIEAIQVKTKRSNNNSHQPPVLQAARHQRVVKV 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02230 409 ProSitePatterns Protein kinases ATP-binding region signature. 99 132 IPR017441 GO:0005524
Mepo1g02230 409 PANTHER OS01G0588500 PROTEIN-RELATED 40 379 - -
Mepo1g02230 409 FunFam Serine/threonine-protein kinase BIK1 62 178 - -
Mepo1g02230 409 FunFam Serine/threonine-protein kinase PBS1 179 394 - -
Mepo1g02230 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Mepo1g02230 409 SUPERFAMILY Protein kinase-like (PK-like) 70 376 IPR011009 -
Mepo1g02230 409 Pfam Protein tyrosine and serine/threonine kinase 96 375 IPR001245 GO:0004672|GO:0006468
Mepo1g02230 409 Gene3D Phosphorylase Kinase; domain 1 66 178 - -
Mepo1g02230 409 CDD STKc_IRAK 99 378 - -
Mepo1g02230 409 Gene3D Transferase(Phosphotransferase) domain 1 179 402 - -
Mepo1g02230 409 ProSiteProfiles Protein kinase domain profile. 93 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02230 Mepo-Chr1 22915018 22919339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02230 79 375 Glycoside Hydrolase AT3G07070 52.685 9.14e-106 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Mepo1g02230 PK_Tyr_Ser-Thr 3.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02230 - - gmx:100794193 644.039