Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02218 ATGGGAGGTGACGGTGCCGTTGAAGATTCTGCTTCGGAATCGAAGACCGAAGTTAACATCAACGTTCGATGCTCCAACGGTACAAAGTATTCCGTTCAGGTTTCTCTCGATTCCACTGTTGGATCGTTCAAGGATCTCATTGCGCGTAACTGTGATATCCCCGCTCAACAACAACGTCTCATCTACAAGGGTCGTATATTGAAGGATGATCAAACGCTTCAAAGCTATGGTTTGGAGGCAGATCATGCTGTGCATTTGGTTCGTAGCTTTGCACCTACCAATGCGAGTGGTGGGACCAATAGTAGTGGCACCAATACCACAACAAATGATGCCGCAGGTGCTGGAGCTAATGCTGCTGGGGGTTTAGGAGGGCTCGGTTTTGGAGCTTCATTGTTTCCTGGACTAGGTGCCAATGGCACTGGGGGAAATAACTTATTTGGCGAGGGATTTCCAGATCTTGAACAAATGCAGCAACCATTTATTTCAAATCCCAATTTAATGAGAGAAATGATGAATTCACCTGCTATGCAGAATCTAGTAAGTAACCCCGAGATAGTGCGGAATCTTATAATGAACAACCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACGTACTTAATGATCCCAGTACTCTCCGCCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGATAGGGCAATGAGCAACATTGAATCATCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAACGTTCAAGAACCATTTTTAAATGCCACTACAATGGCCGGTAACACAGCACTTTCAGGGACTCAGGGTGGCCTATCCAGGGACCAATCAACTAATCCCTCAACCACTAATTCTGAAACAACTACTGGTTCTCCCATTCCCAATGCCAACCCACTTCCTAATCCTTGGTCCTCTACAGGAACTGGAGCTCCCCAAAATAACACCAGGAGATCAACCACTGGTGGGGATGCTAGGCAGCAAGCACCTACTGGCTTAGGAGGGCTTGGTTTGCCTGGCCTTGAAGGCATGCTGGGTGGTAGTGGTATGCCAGATCCTGCTTTATTGACTCAATTAATGCAAAATCCTGCCATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACTTTGAGTCAGATTCTTGGTGCTGCTAATACTGAACAACGTGGTGGCATGCCTGATTTAAATTCTCTTAGAGATGTGATGCAAAATCCAGAGTTCCTACGTTTGTTTCAATCACCTGAGACAATGCAGCAACTCATGTCTTTCCAGCAAGCTCTTCTGTCTCAGCAACAATCAACACGGGAATCGGGTCAAACCGGTCAAACTGGTGGAGGGACTGGACCATTTAACAACATGGGGTTGGAGATGTTATCCAGCATGTTTGGTGGCCTTGGAGCTGGTAGCCTAGCTGCTCCAAATAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAGCTTACACAGCTTCAAGAGATGGGATTCTTTGACACACAAGAGAACATAAGGGCTCTTATTGCCACTTCAGGGAATGTTCATGCGGCTGTTGAACGTCTTTTGGGGAACACTGGTCAGTAG 1617 0.4663 MGGDGAVEDSASESKTEVNINVRCSNGTKYSVQVSLDSTVGSFKDLIARNCDIPAQQQRLIYKGRILKDDQTLQSYGLEADHAVHLVRSFAPTNASGGTNSSGTNTTTNDAAGAGANAAGGLGGLGFGASLFPGLGANGTGGNNLFGEGFPDLEQMQQPFISNPNLMREMMNSPAMQNLVSNPEIVRNLIMNNPQMQELMDRNPELAHVLNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTALSGTQGGLSRDQSTNPSTTNSETTTGSPIPNANPLPNPWSSTGTGAPQNNTRRSTTGGDARQQAPTGLGGLGLPGLEGMLGGSGMPDPALLTQLMQNPAISQMMQSMLSNPQTLSQILGAANTEQRGGMPDLNSLRDVMQNPEFLRLFQSPETMQQLMSFQQALLSQQQSTRESGQTGQTGGGTGPFNNMGLEMLSSMFGGLGAGSLAAPNRSNEPPEQLYATQLTQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNTGQ 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02218 538 Gene3D - 187 246 - -
Mepo1g02218 538 CDD Ubl_Dsk2p_like 18 90 - -
Mepo1g02218 538 MobiDBLite consensus disorder prediction 438 461 - -
Mepo1g02218 538 PANTHER UBIQUILIN 15 533 IPR015496 -
Mepo1g02218 538 FunFam Ubiquitin domain-containing protein DSK2b 190 246 - -
Mepo1g02218 538 Gene3D - 478 538 - -
Mepo1g02218 538 SUPERFAMILY UBA-like 492 534 IPR009060 GO:0005515
Mepo1g02218 538 Gene3D - 6 103 - -
Mepo1g02218 538 FunFam Ubiquitin domain-containing protein DSK2b 479 537 - -
Mepo1g02218 538 SMART CBM 193 232 IPR006636 -
Mepo1g02218 538 SMART CBM 139 180 IPR006636 -
Mepo1g02218 538 SMART CBM 339 392 IPR006636 -
Mepo1g02218 538 SMART CBM 397 432 IPR006636 -
Mepo1g02218 538 SUPERFAMILY Ubiquitin-like 9 105 IPR029071 -
Mepo1g02218 538 MobiDBLite consensus disorder prediction 272 337 - -
Mepo1g02218 538 CDD UBA_PLICs 496 534 - -
Mepo1g02218 538 SMART uba_6 496 534 IPR015940 -
Mepo1g02218 538 SMART ubq_7 18 89 IPR000626 GO:0005515
Mepo1g02218 538 Pfam UBA/TS-N domain 496 532 IPR015940 -
Mepo1g02218 538 ProSiteProfiles Ubiquitin domain profile. 18 87 IPR000626 GO:0005515
Mepo1g02218 538 MobiDBLite consensus disorder prediction 438 465 - -
Mepo1g02218 538 MobiDBLite consensus disorder prediction 272 350 - -
Mepo1g02218 538 FunFam Ubiquitin domain-containing protein DSK2b 15 101 - -
Mepo1g02218 538 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 490 535 IPR015940 -
Mepo1g02218 538 Pfam Ubiquitin family 20 89 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02218 Mepo-Chr1 22839220 22845375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02218 18 87 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 2.22e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02218 K04523 - gmx:100776447 764.992