Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02182 ATGGCTGATTCACCTCCTCCAAGGAATTCAAGGTCTCCTTCACCTTCACCATGGAAAGCTCAATCGAGATCAAGATCAAGGTCTAGGTCTGTTCCAAGACAAAGACCAAGATCTGACTCCAGAGGCCGTGGCAGATCAAGGTCTCGAAGTCCTGTCAGGGAGGCCAATGCTACAAATCCTGGTAATACACTATATGTTACCGGTCTATCTTCAAGGGTCACCGACAGAGACCTAGAGGACCATTTTTCCAAGGAGGGAAAAGTTGCTTCATGTTTTCTTGTGGTGGAGCCACGTACCCGAATTTCTCGTGGTTTTGCTTTTGTTACAATGGATTCCCATGAGGATGCTGAACGTTGTATCAAGCATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTAGAACGGTCAAGAAGAAAGCGTGCAAGAACTCCAACACCAGGGCACTATCTTGGGCTGAAAAATACCAGAGACTATGGCCCTCGTGGTGATCATCGCGGTGACCATCGTGGTGACTTTCGTGGTGACCATCGTGGTGACTTTCGTGGTGATCATCGTGGTGACTATCGCAGTGATCATCGTGGTGACTATCGCGGTGACTACCGAGGTGATCGGGGAAGGAGTCGTGGTGGTTCTGGTCGTGTTGATTATTCAGATCGTAGGTCTCCAAGGCGTTCACCATACCGCGGTGGCCACGATCCTTCACCACAGCGCTCACCCTATGTTGGAAGGTCTAGGAGGGAGAGATCTAGGTCCATTCCCCGTTCTCCTTATAGCCCAGACAGGAGGTATGCTGCTGGATCTAGGTGA 813 0.4982 MADSPPPRNSRSPSPSPWKAQSRSRSRSRSVPRQRPRSDSRGRGRSRSRSPVREANATNPGNTLYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCIKHLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTRDYGPRGDHRGDHRGDFRGDHRGDFRGDHRGDYRSDHRGDYRGDYRGDRGRSRGGSGRVDYSDRRSPRRSPYRGGHDPSPQRSPYVGRSRRERSRSIPRSPYSPDRRYAAGSR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02182 270 MobiDBLite consensus disorder prediction 51 66 - -
Mepo1g02182 270 MobiDBLite consensus disorder prediction 32 50 - -
Mepo1g02182 270 MobiDBLite consensus disorder prediction 138 270 - -
Mepo1g02182 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 133 IPR000504 GO:0003723
Mepo1g02182 270 SMART rrm1_1 63 136 IPR000504 GO:0003723
Mepo1g02182 270 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 47 260 - -
Mepo1g02182 270 MobiDBLite consensus disorder prediction 1 66 - -
Mepo1g02182 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Mepo1g02182 270 MobiDBLite consensus disorder prediction 159 229 - -
Mepo1g02182 270 Gene3D - 8 146 IPR012677 -
Mepo1g02182 270 CDD RRM_SF 64 136 - -
Mepo1g02182 270 MobiDBLite consensus disorder prediction 243 257 - -
Mepo1g02182 270 SUPERFAMILY RNA-binding domain, RBD 55 171 IPR035979 GO:0003676
Mepo1g02182 270 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02182 Mepo-Chr1 22380195 22384044 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02182 31 144 Eukaryotic Initiation Factors Gene Family AT1G49760 28.947 1.04e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02182 K12897 - gmx:100800398 214.927