Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo1g02171 | ATGGGTAAGAAAAAGTCAGAGGATGCAGGTCCATCTACAAAGGCAAAACCAGGTAGCAAAGATGTTTCTAAGAAGGAAAAATTTTCTGTCTCTGCCATGTTGGCAGGTATGGATGAAAAAGCTGATAAGCCTAAAAAGGCATCTTCGAATAAGGCGAAGCCAAAACCTGCCCCGAAAGCTTCTGCATACACTGATGATATTGATCTTCCTCCCTCTGATGATGATGAGTCTGAAGAGGAGCAAGAGGAAAAGCATAGGCCAGATTTGAAGCCACTTGAGGTGTCTATTGCTGAAAAAGAGTTGAAAAAGCGAGAAAAGAAAGATATTTTAGCTGCCCATGTGGCTGAACAGGCAAAGAAGGAAGCTCTTAGGGATGATCGTGATGCTTTCACTGTTGTAATTGGAAGTCGGGCTTCAGTGCTTGATGGAGACGATGGTGCTGATGCTAATGTCAAAGATATAACGATAGAAAATTTTTCTGTGGCTGCTCGGGGTAAAGAACTTCTGAAGAATACTTCAGTGAAGATATCTCATGGAAAACGTTATGGTTTGATTGGGCCGAATGGAATGGGCAAGTCAACACTTTTGAAGCTTCTTGCTTGGAGGAAGATACCGGTACCTAAGAATATTGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCGCTTGAAGCTGTTGTTTCAGCTAATGTTGAACTTATTGAAGTTCGACAAAAAGTTGCTGATCTACAAAATATAGCTTCTGGTGAAGAAGGCATGGATAAAGATGATACTAATGAGGAAAAGGATGCGGGAGAAAAGCTAGCAGAGCTGTATGAACAATTGCAACTGATGGGGTCTGATGCAGCTGAATCTCAAGCGTCAAAGATTTTAGCTGGTCTAGGTTTTACAAAGGACATGCAGGGCCGTCCTACAAAATCCTTTAGTGGCGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCCACTCTATTATTGCTCGATGAACCCACTAATCATCTTGACTTGAGGGCTGTTCTGTGGTTAGAAGAGTACTTGTGTCGTTGGAAGAAAACTTTGGTGGTTGTATCACACGATAGAGATTTTCTCAATACAGTGTGCTCTGAGATTATTCACCTGCATGATTTGAAACTTCATTTCTATCGTGGAAATTTTGATGCTTTTGAGAGTGGGTATGAACAGCGTCGTAGAGAAGCGAATAAGAAGTATGAGATTTTTGACAAGCAATTGAAAGCAGCTAGAAGAACCGGGAACAAGGCTCAACAAGATAAGGTGAAGGACCGAGCTAAGTTCGCAGCAGCTAAGGAATCGAAAAGCAAAAGCAAGGGAAAGGTTGATGAGGATGAGACCCAAGTAGAGGTACCACACAAGTGGAGGGACTACAGCGTGGAGTTCCACTTTCCTGAACCTACTGAACTCACACCTCCACTTCTGCAGCTTATTGAAGTGAGCTTCAGTTACCCAAACCGAGAGGATTTTAGGCTCTCAGATGTTGATGTTGGCATTGATATGGGGACTCGTGTTGCCATCGTTGGGCCTAATGGTGCTGGAAAATCTACACTGCTGAATCTTCTAGCTGGTGATTTGGTTCCAAGTGAAGGTGAAGTTCGAAGAAGTCAGAAGTTGAGGATAGGGAGATATTCCCAACACTTTGTGGACCTACTAACAATGGATGAAACACCTGTTCAGTACCTTCTTCGTCTCCATCCAGACCAGGAGGGGCTTAGTAAGCAAGAGGCTGTTCGTGCAAAACTTGGTAAATATGGGCTACCTAGTCATAACCATCTTACCCCCATTGTCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTATTCACATCGATATCCATGTCAAGACCTCACATTTTATTGTTAGATGAACCTACAAATCATCTGGATATGCAAAGTATTGATGCATTGGCTGATGCGCTGGATGAATTCACTGGTGGAGTTGTTCTTGTTAGTCACGATTCTAGATTGATATCACGTGTCTGTGATGATGAAGAACGGAGTCAAATATGGGTTGTTGAAGATGGCACTGTCAGAAATTTCCCTGGAACATTTGAGGATTACAAGGAAGATCTGCTGAAAGAGATTAAAGCTGAAGTTGATGATTGA | 2142 | 0.429 | MGKKKSEDAGPSTKAKPGSKDVSKKEKFSVSAMLAGMDEKADKPKKASSNKAKPKPAPKASAYTDDIDLPPSDDDESEEEQEEKHRPDLKPLEVSIAEKELKKREKKDILAAHVAEQAKKEALRDDRDAFTVVIGSRASVLDGDDGADANVKDITIENFSVAARGKELLKNTSVKISHGKRYGLIGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANVELIEVRQKVADLQNIASGEEGMDKDDTNEEKDAGEKLAELYEQLQLMGSDAAESQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCSEIIHLHDLKLHFYRGNFDAFESGYEQRRREANKKYEIFDKQLKAARRTGNKAQQDKVKDRAKFAAAKESKSKSKGKVDEDETQVEVPHKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKYGLPSHNHLTPIVKLSGGQKARVVFTSISMSRPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSQIWVVEDGTVRNFPGTFEDYKEDLLKEIKAEVDD | 713 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo1g02171 | 713 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 154 | 415 | IPR003439 | GO:0005524 | |
| Mepo1g02171 | 713 | Pfam | ABC transporter | 169 | 340 | IPR003439 | GO:0005524 | |
| Mepo1g02171 | 713 | Gene3D | - | 152 | 438 | IPR027417 | - | |
| Mepo1g02171 | 713 | FunFam | ABC transporter F family member 4 | 451 | 713 | - | - | |
| Mepo1g02171 | 713 | CDD | ABCF_EF-3 | 486 | 688 | - | - | |
| Mepo1g02171 | 713 | ProSitePatterns | ABC transporters family signature. | 312 | 326 | IPR017871 | GO:0005524|GO:0016887 | |
| Mepo1g02171 | 713 | MobiDBLite | consensus disorder prediction | 1 | 93 | - | - | |
| Mepo1g02171 | 713 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 154 | 405 | IPR027417 | - | |
| Mepo1g02171 | 713 | MobiDBLite | consensus disorder prediction | 422 | 459 | - | - | |
| Mepo1g02171 | 713 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 486 | 711 | IPR003439 | GO:0005524 | |
| Mepo1g02171 | 713 | FunFam | ABC transporter F family member 4 | 152 | 436 | - | - | |
| Mepo1g02171 | 713 | CDD | ABCF_EF-3 | 154 | 385 | - | - | |
| Mepo1g02171 | 713 | PANTHER | ATP-BINDING TRANSPORT PROTEIN-RELATED | 122 | 707 | - | - | |
| Mepo1g02171 | 713 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 465 | 698 | IPR027417 | - | |
| Mepo1g02171 | 713 | Gene3D | - | 448 | 712 | IPR027417 | - | |
| Mepo1g02171 | 713 | Pfam | ABC transporter | 503 | 638 | IPR003439 | GO:0005524 | |
| Mepo1g02171 | 713 | SMART | AAA_5 | 178 | 384 | IPR003593 | GO:0016887 | |
| Mepo1g02171 | 713 | SMART | AAA_5 | 512 | 688 | IPR003593 | GO:0016887 | |
| Mepo1g02171 | 713 | Coils | Coil | 404 | 424 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo1g02171 | Mepo-Chr1 | 22289621 | 22294739 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo1g02171 | 486 | 689 | Calmodulin-binding Proteins | AT2G36910 | 26.222 | 1.58e-11 | 66.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo1g02171 | K06184 | - | gmx:100806865 | 1142.1 |