Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02136 ATGGCGGAAGAGAGAATCAGCGGCGTAGTGCAATGGTTCAACAACACCAAAGGCTTCGGATTCATCAAACCCGATGACGATAGCGAAGATCTCTTCGTTCATCAATCTGACATCAGATCTGAAGGATTTCGCTCTCTTTTCGAAGGCGATCGCGTTGAGTTCACCATCACCGACGGCGATAACGGCAAAACCAAAGCCGTTGATGTCACCGGTCCTAAGGGTGAACCTCTTCAGGTTAGGCAGGATAACTATGGTGGAGGCGGCGGCGGCGGTCGTGGATTTAGAGGAGGAGAGAGAAGGAACGGTGGTGGTGGTTGTTATACTTGTGGTGATACTGGTCACATCGCTAGGGATTGTGATCGTTCCGATCGGAATGATAGGAATGATCGTTCCGGTGGTGGTGGTGGAGACCGTGACCGTGCTTGCTATACTTGTGGTTCTTTTGAACATTTTGCTAGGGATTGCATGCGTGGAGGCGGCAACAACAACAACGGCGGTGGTGGATATGGTGGTGGAGGCACATCTTGCTACAGGTGTGGTGGGGTTGGTCACATAGCAAGAGATTGCGCTACTCCTAGTAGCGGAGGCGGTGGTGGTGGTGCTTGCTATAAGTGCGGTGAGGTGGGTCACATAGCTAGGGATTGCAGCAATGAAGGAGGAAGGTTTGATGGTGGCAATGGAAGGTATGATGATGGCAATGGAAGGTTTGGTGGTGGCAACAGAAGATTTGGCGGCGGTGGTGGCGGCGGCCGCGATGGAGGAAAAGGCACATGCTTTAACTGTGGGAAGGCAGGACATTTTGCAAGGGATTGTGTTGAGGCTTCTGGTTGA 831 0.5223 MAEERISGVVQWFNNTKGFGFIKPDDDSEDLFVHQSDIRSEGFRSLFEGDRVEFTITDGDNGKTKAVDVTGPKGEPLQVRQDNYGGGGGGGRGFRGGERRNGGGGCYTCGDTGHIARDCDRSDRNDRNDRSGGGGGDRDRACYTCGSFEHFARDCMRGGGNNNNGGGGYGGGGTSCYRCGGVGHIARDCATPSSGGGGGGACYKCGEVGHIARDCSNEGGRFDGGNGRYDDGNGRFGGGNRRFGGGGGGGRDGGKGTCFNCGKAGHFARDCVEASG 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02136 276 Gene3D - 173 224 - -
Mepo1g02136 276 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Mepo1g02136 276 ProSiteProfiles Zinc finger CCHC-type profile. 176 189 IPR001878 GO:0003676|GO:0008270
Mepo1g02136 276 ProSiteProfiles Zinc finger CCHC-type profile. 258 271 IPR001878 GO:0003676|GO:0008270
Mepo1g02136 276 ProSiteProfiles Zinc finger CCHC-type profile. 202 217 IPR001878 GO:0003676|GO:0008270
Mepo1g02136 276 Gene3D - 1 83 IPR012340 -
Mepo1g02136 276 Gene3D - 249 276 - -
Mepo1g02136 276 ProSiteProfiles Zinc finger CCHC-type profile. 142 155 IPR001878 GO:0003676|GO:0008270
Mepo1g02136 276 MobiDBLite consensus disorder prediction 70 96 - -
Mepo1g02136 276 Gene3D - 92 165 - -
Mepo1g02136 276 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Mepo1g02136 276 SUPERFAMILY Retrovirus zinc finger-like domains 239 272 IPR036875 GO:0003676|GO:0008270
Mepo1g02136 276 SUPERFAMILY Retrovirus zinc finger-like domains 99 157 IPR036875 GO:0003676|GO:0008270
Mepo1g02136 276 SMART c2hcfinal6 175 191 IPR001878 GO:0003676|GO:0008270
Mepo1g02136 276 SMART c2hcfinal6 141 157 IPR001878 GO:0003676|GO:0008270
Mepo1g02136 276 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Mepo1g02136 276 SMART c2hcfinal6 201 217 IPR001878 GO:0003676|GO:0008270
Mepo1g02136 276 SMART c2hcfinal6 257 273 IPR001878 GO:0003676|GO:0008270
Mepo1g02136 276 SUPERFAMILY Retrovirus zinc finger-like domains 167 218 IPR036875 GO:0003676|GO:0008270
Mepo1g02136 276 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Mepo1g02136 276 SMART csp_8 7 72 IPR011129 GO:0003676
Mepo1g02136 276 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Mepo1g02136 276 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Mepo1g02136 276 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Mepo1g02136 276 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Mepo1g02136 276 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Mepo1g02136 276 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Mepo1g02136 276 PANTHER COLD SHOCK DOMAIN PROTEIN 2 129 191 - -
Mepo1g02136 276 Pfam Zinc knuckle 140 156 IPR001878 GO:0003676|GO:0008270
Mepo1g02136 276 Pfam Zinc knuckle 176 190 IPR001878 GO:0003676|GO:0008270
Mepo1g02136 276 Pfam Zinc knuckle 201 216 IPR001878 GO:0003676|GO:0008270
Mepo1g02136 276 Pfam Zinc knuckle 256 271 IPR001878 GO:0003676|GO:0008270
Mepo1g02136 276 Pfam Zinc knuckle 105 120 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02136 Mepo-Chr1 22004643 22005843 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Mepo1g02136 CSD 2.8e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02136 K09250 - gmx:106796585 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g02136 1 22004643 22005843 Mepo1g02136 1 22004643 22005843 ECH