Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02115 ATGAGAACTCGAAATGCCGATTCATCTTCCAAATCCACAACCCCTAAGAAAACACCGCCGGCGAGAAAATCCGCCGGAGAATCTCCCACAGCAAAACGCACTCCTCCGTCAAAACCCAGAAACGCTAAGAAGACGGAAGCATCGCCCGCAACCGATCCAGATCAATCTCAGAAGAAGAAATTATTAGCTAGTGCTACCACTACAAAATCTGGGAAGTGGAAATCACCGGGGAAACCGCGAACAAAAGTGGTTGCTGTCACTCCGAATTTGGAAGAGAAATTGGAGGTAGAAGCTGATGAAACTACAGTTATAGATAAAGTGGAAGAAGTTGGAAATGTTAACGACATTGATGCAGATAATATGGAGTGTGAAAAAGAGGGGGAACAGGAGCCGATGGAAGTGGATCAACCTGTTGTTGAAAAAGTTTGTGAATTGGTCGAAAAGGGAAAGAGTATAGTAGTAGAGGCTGAACCAATTGTTTCTCAGGATGGTTCGATTTCTTTGAAACAACCAGGTTGCACCCTTGTGGACCTTAATATTTCTGTGGCCGATAATGAAGATTATACCGATGTGAAGGAGGGAGGGGAAACGTTGAAAGAGGAAGAGTTGACTGTACAGGAGGGAGAAAGAGGAAAGCAAGAGTTGAAAGCACAGGAGGGAGAGAGAGGAACAGACAAGTTGAAAGCACATGAAGGAGAAAAAGGAACGGACGAGTTGAAAGAACAAGGAGAGAACGGAAAAGAAGAGTTGGACCAACAAAAAAGCGAGAAAGAAATGGAAGAGTTTAAAGCAGTGGAAGGAAAAGAAGGAAAGGAAGAGCTGAAAGAACAGGAAGGAGAGAAAGGAAAGGAAGAGTTGAAAGAATCAGTAGGAGATAAAGAAAAAGAAGAGTTAAAAGAACATGGAGAGAAAGGAAAGGAAGAGTTAAAAGAAGAGGATCTAGAAAACACAAAAGGAGAGGAAATGGACATTATTGGACATGAAGAGCATTCTAGTGTAGAAGTACAAGCCCAGCTGCAAAAAGATGTTGATCCCAAAAATTGTGGTGTTGAAGGGGCAAAGAGTGGCGAATCGATAGATCTTGGGGAACAAGAGAGGGTGCAGCTTGAGGATGAAGATCCAGAGGAAGATCCAGAGGAAGACCCAGAAGAAGATCCTGAGGAACAGCCCGAAGACACTGAGACATTGGATGAAGAGCATGACGAGCATATGGAATATGAAGCCATCGCAAAGCAACGAAGAATTAGGAAAGAGCATGAGATATTTGTTGGTGGATTGGATTGTGATACTACAGAGGAAGATCTGAAAAAGGCTTTTCAGAGGATTGGGGAGGTACTGGAAGTCAGGTTGCATAAAAATTCTTCAACAAGTAAAAATAGGGGCTATGCTGTTGTGAGGTTTGCTAATAAGGAGCATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACGTGGAAAACGATGCGGCACTTCACTTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACATGGACAAAACAAGCTGTTAAACAGAAGCTGAAGGATTATGGTGTAGAAGGGGTTGAAAACATTACACTCGTACCAGATGTTCAACATGAAGGCTTGAGCCGGGGTTTTGCTTTCCTTGAGTTTTCTTGTCATGCTGATGCCATGCTCGCATATAAGAGACTTCAAAAGCCTGATGTCATCTTTGGTCATGCCGAGCGAACTGCTAAGGTAGCCTTTGCTGAACCGATACGTGAACCAGACCCAGAGATAATGGCACAAGTGAAGTCTGTGTTTATTAATGGTCTACCTCTTCACTGGGACGAAGATCATGTGAGGGAGCGTCTGAAATCTTACGGTGAAATTGTAAAAATTGTTTTGGCAAGGAAAATGTCCACATCTAAGAGGAAGGATTATGGATTTGTGGATTTTTCTACGCATGAAGCTGCTTTAGCTTGTGTTGACAGTGTAAATAAATCAGAACTGGGAGATGGGACATCAAAGATAAAATTGAGAGCTAGGCTTTCAAACCCTTTGCCTAAAACGCAGGCTGTCAAGGGCGGCATGTGTGGTGGCCTCCATATTGGTCAGGCTAGGAGTGAAGCCTACCCAAGATCCGAAAGGGGTTTTGGGCGGGGGCGGGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAGTAGGGGCAGGAGTTTCTATCATCATGGGGGGCGCGGTCAAATCAGAAGAATGGGTTTTTGGGACGAACCTGATTTTAGTATGCATCCGGATTTCCATCAGCGGCAATTTGGTCCACAAGGACCTATGAGGGGCGGGCACTATGCAGGTAGTCGAGGTGGTGCTCCTTTTGCTGGTCCATCTAGACATTATAATGATAGAGCATGGTATGGTATCCCTGACGGAGGCCCCATTGAGCCTATTCCTCCAAGAAGGCCCTATTCTCCAGGTGGACAGTTTTATGGTATCCCTGATGGAGGCCCCGGTGAGCCTATTCCTCCAAGAAGACCCTACTCTCCAGGTGGGCAGTTTTATGGTATCTCTGATGGAGGCCCTGGTGAGCCTATTCCTATAAGAAGGCCCTACTCTCCAGGTGGACAGTTTGACATGCCTTTTATGGGAAGGCATGTTGATGATCCATATCTATATGATGACAATATGCGTGGAATCAAACGCCCATTTTATATGACTGACCCTGAACCTGATTACATGGGGCCTAATAGATATCGCCCCCGATTTGATTATGCGGACCCATCTGTATTTCACGGAACTCGACATCATGATTATGCCGGTGCTGGCAGAGGACAGTACCCGCCGGACTATTATGGTTCTGACCATGGTGGAGGTCCATATCCATCTTTTTATGGCGGTGATGGCCCACATGGACACAGATACTATTATTAG 2901 0.4485 MRTRNADSSSKSTTPKKTPPARKSAGESPTAKRTPPSKPRNAKKTEASPATDPDQSQKKKLLASATTTKSGKWKSPGKPRTKVVAVTPNLEEKLEVEADETTVIDKVEEVGNVNDIDADNMECEKEGEQEPMEVDQPVVEKVCELVEKGKSIVVEAEPIVSQDGSISLKQPGCTLVDLNISVADNEDYTDVKEGGETLKEEELTVQEGERGKQELKAQEGERGTDKLKAHEGEKGTDELKEQGENGKEELDQQKSEKEMEEFKAVEGKEGKEELKEQEGEKGKEELKESVGDKEKEELKEHGEKGKEELKEEDLENTKGEEMDIIGHEEHSSVEVQAQLQKDVDPKNCGVEGAKSGESIDLGEQERVQLEDEDPEEDPEEDPEEDPEEQPEDTETLDEEHDEHMEYEAIAKQRRIRKEHEIFVGGLDCDTTEEDLKKAFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEMKNPVIRGKRCGTSLSEDNDTLFLGNICNTWTKQAVKQKLKDYGVEGVENITLVPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPLHWDEDHVRERLKSYGEIVKIVLARKMSTSKRKDYGFVDFSTHEAALACVDSVNKSELGDGTSKIKLRARLSNPLPKTQAVKGGMCGGLHIGQARSEAYPRSERGFGRGRGRQPFNNRGNFSRGRSFYHHGGRGQIRRMGFWDEPDFSMHPDFHQRQFGPQGPMRGGHYAGSRGGAPFAGPSRHYNDRAWYGIPDGGPIEPIPPRRPYSPGGQFYGIPDGGPGEPIPPRRPYSPGGQFYGISDGGPGEPIPIRRPYSPGGQFDMPFMGRHVDDPYLYDDNMRGIKRPFYMTDPEPDYMGPNRYRPRFDYADPSVFHGTRHHDYAGAGRGQYPPDYYGSDHGGGPYPSFYGGDGPHGHRYYY 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02115 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 499 584 IPR000504 GO:0003723
Mepo1g02115 966 Coils Coil 236 260 - -
Mepo1g02115 966 FunFam Heterogeneous nuclear ribonucleoprotein Q 499 583 - -
Mepo1g02115 966 Coils Coil 198 218 - -
Mepo1g02115 966 Gene3D - 499 583 IPR012677 -
Mepo1g02115 966 MobiDBLite consensus disorder prediction 1 86 - -
Mepo1g02115 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 599 665 IPR000504 GO:0003723
Mepo1g02115 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 501 569 IPR000504 GO:0003723
Mepo1g02115 966 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 421 489 IPR000504 GO:0003723
Mepo1g02115 966 FunFam Heterogeneous nuclear ribonucleoprotein Q 584 737 - -
Mepo1g02115 966 SMART rrm1_1 500 577 IPR000504 GO:0003723
Mepo1g02115 966 SMART rrm1_1 598 671 IPR000504 GO:0003723
Mepo1g02115 966 SMART rrm1_1 420 493 IPR000504 GO:0003723
Mepo1g02115 966 CDD RRM_SF 599 671 - -
Mepo1g02115 966 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 46 966 - -
Mepo1g02115 966 Gene3D - 353 498 IPR012677 -
Mepo1g02115 966 SUPERFAMILY RNA-binding domain, RBD 588 679 IPR035979 GO:0003676
Mepo1g02115 966 MobiDBLite consensus disorder prediction 187 330 - -
Mepo1g02115 966 CDD RRM_SF 501 564 - -
Mepo1g02115 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 597 679 IPR000504 GO:0003723
Mepo1g02115 966 MobiDBLite consensus disorder prediction 366 400 - -
Mepo1g02115 966 MobiDBLite consensus disorder prediction 48 74 - -
Mepo1g02115 966 MobiDBLite consensus disorder prediction 702 732 - -
Mepo1g02115 966 CDD RRM_SF 421 490 - -
Mepo1g02115 966 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 419 497 IPR000504 GO:0003723
Mepo1g02115 966 Gene3D - 586 743 IPR012677 -
Mepo1g02115 966 SUPERFAMILY RNA-binding domain, RBD 420 564 IPR035979 GO:0003676
Mepo1g02115 966 MobiDBLite consensus disorder prediction 187 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02115 Mepo-Chr1 21774152 21780975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02115 421 665 Eukaryotic Initiation Factors Gene Family AT1G71770 25.581 6.48e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02115 - - tpra:123920681 1316.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g02115 1 21774152 21780975 Mepo1g02115 1 21774152 21780975 ECH