Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02059 ATGTCATTCAAAAGTATAGTCCGCGAACTCAAGGGGATGAAAAATGGGATAGGTAGCATATCAAAGCGGGGTTCCGACACCAAGAATTGGCTATGTCGGTCAAAGTCACATGTTGCTCCGGATGTAACTCCAATTGAACCTATTCAACAGGGACAATGGGCGAGTCTACCTCCTGAATTGCTGCTGGACATAATCCGTAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCTCGTGCTGTTGTTGTTTTTTGTGCTTCGGTATGTAAATCATGGAGGTCTGTCACTAAAGATATCATCAAAACCCCTCAGCAATGCGGAAGGATCACATTTCCTATTTCATTGAAGCAACCCGGTCCCCGTGATTATCCGATCCAGTGCTTTATTAGGAGGAACAGAGAAACTTCTACCTTCGTGTTGTACTTAGGTTTGGTGCCATCGGAGCATGAGAGTAACAAGTTGTTGTTAGCCGCCAGAAAGATAAGAAGGGCCACAGGCACCGACTTCGTCATATCCTTGGGTACAGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTGAGGTCTAATTTTTGGGGCACCAAGTTTGCTATATATGACAACCTACCTCCACATGACGCTGCAGTTCATCCAAATCGTCGACCAAGTGTGAGACTTAATTCTAAGCAGGTGTCACCAAGAGTTCCAGCATGTAACAATCTTGTTGGCACCATTTCCTATGAGCTAAATGCTCTCTGGACTAGAGGGCCAAGAAGAGTGCATTGCATCATGAACTCTATACCTATCTCAGCTATTCAGGAAGGGGGCATCGCCCCAACCCCAACATCATTACCTCAAATATTCAGTGAACCTTTTCCCCCCTCACCAGCACTGAAAGAAAAAAGTGCTATGACAGATTCGTACTCTGGCTGCCTATCAGAGCTACCTGAACCGAGCCAAGGCTCGATGGACTCCTTGGTACTAAAAAACAAGTCTCCTAGATGGCACGAGCAGCTCCAGTGTTGGTGCCTAAACTTCATGGGTCGTGTTACAGTGGCATCTGTTAAGAACTTTCAGCTTGTAGCTTCTGTTGATCCGTCTCATAATGTTTCTCCCGCTGAGCAAGAAAGGGTAATCTTACAGTTTGGAAAGATTGGGAAAGATATATTCACCATGGACTACTCTTACCCACTCTCCGCCTTCCAAGCCTTCGCCATCTGCTTGACAAGCTTTGATACCAAACCCGCTTGTGAATGA 1239 0.4576 MSFKSIVRELKGMKNGIGSISKRGSDTKNWLCRSKSHVAPDVTPIEPIQQGQWASLPPELLLDIIRRVEESETSWPARAVVVFCASVCKSWRSVTKDIIKTPQQCGRITFPISLKQPGPRDYPIQCFIRRNRETSTFVLYLGLVPSEHESNKLLLAARKIRRATGTDFVISLGTDDFSRASNKYVGKLRSNFWGTKFAIYDNLPPHDAAVHPNRRPSVRLNSKQVSPRVPACNNLVGTISYELNALWTRGPRRVHCIMNSIPISAIQEGGIAPTPTSLPQIFSEPFPPSPALKEKSAMTDSYSGCLSELPEPSQGSMDSLVLKNKSPRWHEQLQCWCLNFMGRVTVASVKNFQLVASVDPSHNVSPAEQERVILQFGKIGKDIFTMDYSYPLSAFQAFAICLTSFDTKPACE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02059 412 PANTHER TUBBY-RELATED 49 410 - -
Mepo1g02059 412 SUPERFAMILY Tubby C-terminal domain-like 102 412 IPR025659 -
Mepo1g02059 412 Gene3D Tubby Protein; Chain A 111 412 IPR025659 -
Mepo1g02059 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Mepo1g02059 412 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Mepo1g02059 412 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Mepo1g02059 412 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Mepo1g02059 412 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Mepo1g02059 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Mepo1g02059 412 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Mepo1g02059 412 Pfam F-box domain 53 99 IPR001810 GO:0005515
Mepo1g02059 412 CDD F-box_AtTLP-like 53 97 - -
Mepo1g02059 412 Gene3D - 46 100 - -
Mepo1g02059 412 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
Mepo1g02059 412 ProSitePatterns Tub family signature 2. 397 412 IPR018066 -
Mepo1g02059 412 Pfam Tub family 114 407 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02059 Mepo-Chr1 21209371 21212306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02059 1 412 TUB Transcription Factor Family AT2G18280 62.169 8.17e-178 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mepo1g02059 Tub 7.1e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02059 K19600 - gmx:100805380 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g02059 1 21209371 21212306 Mepo1g02059 1 21209371 21212306 ECH
Mepo1g02059 1 21209371 21212306 Mepo5g00902 5 8824726 8828643 ECH
Mepo5g00902 5 8824726 8828643 Mepo1g02059 1 21209371 21212306 PCT