Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02043 ATGATGCATCATTGTTGTAGTAGCTCTCAACAAGGTCACATAATGGGAGGAACATGCACATGTGGTATGTTTCATCCTCAAACAAATTCTAACTACTCCTTGCTTTACTCTAACTACCAACAACATGATCATTACGATTTTGACCCTTACTCTTACACTACTCCATCTTCTTCTTCTTCTGTTGATTGCACACTCTCCCTTGCTACCCCTTCCACACGTTTATCTGAAGACCAAGATAAACGAAACCGTCGCTCTTCTCTTGCTAATTTTTTCTGTACCAAATCTTCAAACACTAAACATAATTCTCAATCTCAATCCAAGTCAAACAAAGGAAACAATATTGGTAGTAACTCTAACAATGATTCTCTTCTTGCTCGTCGTTGTGCTAGCTGTGATACCACTTCTACACCCCTTTGGAGGAATGGTCCTCGTGGCCCAAAGTCATTATGCAATGCTTGTGGGATTAGATACAAGAAGGAAGAGAGAAGAGCGAACGTCGCGGTTGCCACGACAGCCGTGACTAACAGCGGCATAATGGAGTCAGGAAACTTCTACAACAACAACAATTCATGGTACTCATCACAACCACAGAGTCAAATGTATGGCAATGAGCTACGTTTCATGGATGATTCAGATGTAGAATCAGAAAATGGCATTCCTAATTTCCTTTCTTGGAGACTAAACACAAGTCTTGTTCACGATTACACAAGATGA 714 0.4076 MMHHCCSSSQQGHIMGGTCTCGMFHPQTNSNYSLLYSNYQQHDHYDFDPYSYTTPSSSSSVDCTLSLATPSTRLSEDQDKRNRRSSLANFFCTKSSNTKHNSQSQSKSNKGNNIGSNSNNDSLLARRCASCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANVAVATTAVTNSGIMESGNFYNNNNSWYSSQPQSQMYGNELRFMDDSDVESENGIPNFLSWRLNTSLVHDYTR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02043 237 ProSiteProfiles GATA-type zinc finger domain profile. 122 158 IPR000679 GO:0006355|GO:0043565
Mepo1g02043 237 SMART GATA_3 122 174 IPR000679 GO:0006355|GO:0043565
Mepo1g02043 237 Pfam GATA zinc finger 128 162 IPR000679 GO:0006355|GO:0043565
Mepo1g02043 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 125 168 - -
Mepo1g02043 237 PANTHER GATA TRANSCRIPTION FACTOR 18 12 237 IPR044272 GO:0003700|GO:0009908
Mepo1g02043 237 CDD ZnF_GATA 127 159 IPR000679 GO:0006355|GO:0043565
Mepo1g02043 237 Gene3D - 124 179 IPR013088 GO:0006355|GO:0008270
Mepo1g02043 237 MobiDBLite consensus disorder prediction 94 119 - -
Mepo1g02043 237 ProSitePatterns GATA-type zinc finger domain. 128 153 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02043 Mepo-Chr1 21075866 21077239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02043 20 237 C2C2-Gata Transcription Factor Family AT3G50870 40.345 1.11e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo1g02043 GATA 1.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02043 - - jre:108997534 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g02043 1 21075866 21077239 Mepo1g02043 1 21075866 21077239 ECH
Mepo5g00887 5 8654922 8655710 Mepo1g02043 1 21075866 21077239 PCT