Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02034 ATGTTTGGCAGGCCAAATTTTTGGCGCACCAAGTTCACTATATACGACACTCAACCTCCAGTATTTGATGAAACTCTTTCTTCTTCACCAGCACTAAAGGGAAAACGTTCAACGAAAGATTCATACTTTGCAAGCCTATCAAAGCTACCAGAATTGAGCCGAGGCTCATTCGAGACCTTTATACTAAAAAACAAGGCTCTTAGATGGGATGAGCAGCGCAATGGTTGGTGCCCTGACTTCATGGGCCGTGTTAAAGTGGAATCTAAGAAAAACTTTGACCTTGTAGCTTTTGTTGATCGATCTCATAATGTTTCTCCTGGAGTGCGAAAATGGCCAATTTTGCAGTTAGGAAGCGCGGATGGGAAAGATATCTTCTTCATGCACTACACTTATCCATTCTCTGCCTTCCAAGCCTTTGCCATCTGTTTGATTTGTTGCATATAA 444 0.4212 MFGRPNFWRTKFTIYDTQPPVFDETLSSSPALKGKRSTKDSYFASLSKLPELSRGSFETFILKNKALRWDEQRNGWCPDFMGRVKVESKKNFDLVAFVDRSHNVSPGVRKWPILQLGSADGKDIFFMHYTYPFSAFQAFAICLICCI 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02034 147 Gene3D Tubby Protein; Chain A 29 146 IPR025659 -
Mepo1g02034 147 Pfam Tub family 57 143 IPR000007 -
Mepo1g02034 147 PANTHER TUBBY-RELATED 51 144 - -
Mepo1g02034 147 SUPERFAMILY Tubby C-terminal domain-like 4 143 IPR025659 -
Mepo1g02034 147 PRINTS Tubby superfamily signature 131 147 IPR000007 -
Mepo1g02034 147 PRINTS Tubby superfamily signature 80 96 IPR000007 -
Mepo1g02034 147 PRINTS Tubby superfamily signature 62 79 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02034 Mepo-Chr1 20990588 20991031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02034 22 143 TUB Transcription Factor Family AT2G18280 48.361 1.63e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mepo1g02034 Tub 7.8e-25 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02034 K19600 - mtr:11406729 285.804