Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02033 ATGAAAAATTCATACTTTGCAAGCCTATCAAGGCTACCAGGACTGAGCCAAGGCCCAGTCGCGACCTTTATACTAAAAAACAATGCTCTTAGAAGGGATGAACATCACAATGGTTGGTGCCCTGATGTCATGGGGCGTGTTAAAGTGACATCTGTGGAAAACCTTAACCTTGTAGCCATTGTTTATCGATCTTTGCTTTATTCGGAGGAAAAAAATGGGAGAATCATCAACGTCACCTCAAACATTTCAGTTGTACTTAGGTTTGGAGCCGTGTCCAGTTTTTTGCTCAACAAGTTCTTTGTATACGACAATCAACCTCCAGATGATGCTGCAGTTCAACCAAATTGTCGATCAAGCGGGATATTTAATAATAAGGTATCACCATCTCCAAAGAATTGTCGATCATCAACTTACGGAAGAATTGCTCCAACATGTAGCCGTCTTGTTAGCACAATTTCCAAAGACTCGTTAAGAAGAATACATTGCATCATGAATTCTATACCTGTCTCAGCTATTCATAAAGGAGGAAGTGCCCCGACATTAACATCGTTACCTCCCTTATCTGATGAAACATTTTCTCCCTCACCAACACTGAAGGGGAAAACTCCAATGAGAGATTCGTCCTCTGCAAGCCAATCAGAGCTACCAGGACTGAGTGAGCCCTTGACACTCAAAAACAAGGCTCCTATATGGGATGAGCAGTGCAAAGGTTGGCACCTAGACTTCAAGGGACGTGTTACAGTGGCATCTGTGAAAAACTTTCAATTTGTAGCTGCTGTTGATCCATCTCATAATGTTTCTCCTGAGGAGCAAGAAAGGGTAATCTTACAGTTTGGAAAGATTGGAACAGATATATTCACCATGGACTACTCTTATCCACTCTCCGCCTTCCAAGCCTTTGCCATCTGTTTGGCTTCTTCCTTTTCCGACCTCTAA 936 0.4241 MKNSYFASLSRLPGLSQGPVATFILKNNALRRDEHHNGWCPDVMGRVKVTSVENLNLVAIVYRSLLYSEEKNGRIINVTSNISVVLRFGAVSSFLLNKFFVYDNQPPDDAAVQPNCRSSGIFNNKVSPSPKNCRSSTYGRIAPTCSRLVSTISKDSLRRIHCIMNSIPVSAIHKGGSAPTLTSLPPLSDETFSPSPTLKGKTPMRDSSSASQSELPGLSEPLTLKNKAPIWDEQCKGWHLDFKGRVTVASVKNFQFVAAVDPSHNVSPEEQERVILQFGKIGTDIFTMDYSYPLSAFQAFAICLASSFSDL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02033 311 ProSitePatterns Tub family signature 1. 242 255 IPR018066 -
Mepo1g02033 311 MobiDBLite consensus disorder prediction 181 219 - -
Mepo1g02033 311 SUPERFAMILY Tubby C-terminal domain-like 92 306 IPR025659 -
Mepo1g02033 311 PRINTS Tubby superfamily signature 271 290 IPR000007 -
Mepo1g02033 311 PRINTS Tubby superfamily signature 292 311 IPR000007 -
Mepo1g02033 311 PRINTS Tubby superfamily signature 224 241 IPR000007 -
Mepo1g02033 311 PRINTS Tubby superfamily signature 86 110 IPR000007 -
Mepo1g02033 311 PRINTS Tubby superfamily signature 242 258 IPR000007 -
Mepo1g02033 311 PANTHER TUBBY-RELATED 87 307 - -
Mepo1g02033 311 MobiDBLite consensus disorder prediction 178 220 - -
Mepo1g02033 311 Pfam Tub family 92 306 IPR000007 -
Mepo1g02033 311 Gene3D Tubby Protein; Chain A 84 308 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02033 Mepo-Chr1 20982825 20986744 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02033 92 306 TUB Transcription Factor Family AT2G18280 49.083 1.25e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mepo1g02033 Tub 1.4e-50 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02033 K19600 - gmx:100805380 249.595