Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02021 ATGGTTGATTTAGACAATGTTTCCACAGCTTCAGGTGAAGCTAGCATCTCTTCCTCTGGTAATAACAATATTCAATCACCAATTCCAAAACCCACCAAGAAAAAAAGAAATCTTCCAGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCACCAACAACGTTGTTAGCTACAAACAGATTTGTGTGTGAAATATGTAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACATAATCTACCATGGAAACTGAGACAAAGATCAAGTAAAGAAATTAGGAAAAGGGTTTATGTTTGTCCTGAACCAACTTGTGTTCATCATGATCCTTCTAGAGCTTTAGGTGATTTAACTGGGATAAAAAAGCACTTTTGTAGAAAACACGGTGAGAAAAAGTGGAAATGTGACAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAAGTTTGTGGTTCTAGAGAGTATAAATGTGATTGTGGAACCGTTTTTTCCAGGAGGGATAGTTTTATTACACATAGAGCTTTTTGTGATGCGTTGGCAGAGGAGAATGCAAAATCTCAGAATCAAGCTGTTGTGAAAGCTAATTCAGAATCTGATTCAAAGGTTTTGACCGGTGATTCGTTGCCGGTGTTGATGCCGGCAGTGATTACTGCTGCTGCTGCTACTACTCCTCAGTCAAATAGTGGTGTGTCCTCTGCTTTGGAGACTCAGAAGCTAGATTTGCCAGAAAATCCACCACAAATCATAGAGGAACCACAAGTTGTTGTTACTACTACTGCTAGTCCTTTAAATGCGAGTTGTAGCTGCAGTACTAGCTCAACAAGCAACGGCTGTGCCACTACCAGCACTGGCGTGTTTGCAAGCTTGTTTGCTTCATCAACAGCTTCAGCTTCCGCGAGTCTCCAACCTCAGGCACCGGCGTTCAGTGACCTAATTAGGTCCATGGGATGTACAGATCCTCGTCCTACAGATTTCTCAGCTCCTCCATCGTCCGAGGCGATTTCTCTTTGCCTTTCGACCAATCATGGATCATCAATTTTCGGAACAGGAGGGCAGGAGTGTCGCCAATACGTGCCAACACATCAGCCGCCCGCGATGTCTGCCACTGCATTACTTCAAAAAGCAGCTCAAATGGGTGCTGCTGCAACAAATGCCTCTCTGCTTCGTGGGCTTGGAATTGTGTCGTCTTCTGCTTCCACTTCATCTGGTCAACAAGATAGCCTGCATTGGGGCCTCGGACAAATGGAACCAGAGGGTTCTAGTTTAGTTTCTGCAGGACTTGGACTAGGTCTTCCTTGTGACGGCGATTCTGGACTAAAGGAATTGATGTTGGGGACTCCGTCAATGTTTGGTCCTAAGCAGACAACTCTAGATTTCCTAGGATTGGGGATGGCTGCTGGTGGTAGTGCCGGTGGAGGCTTGTCTGCACTTATCACATCAATCGGCGGAGGCAGTGGTTTGGATGTTACCGCAGCAGCCGCATCCTTTGGTAATGGAGAGTTCTCTGGCAAAGATATTGGAAGGAGTTCATGA 1563 0.4472 MVDLDNVSTASGEASISSSGNNNIQSPIPKPTKKKRNLPGMPDPEAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEIRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGSREYKCDCGTVFSRRDSFITHRAFCDALAEENAKSQNQAVVKANSESDSKVLTGDSLPVLMPAVITAAAATTPQSNSGVSSALETQKLDLPENPPQIIEEPQVVVTTTASPLNASCSCSTSSTSNGCATTSTGVFASLFASSTASASASLQPQAPAFSDLIRSMGCTDPRPTDFSAPPSSEAISLCLSTNHGSSIFGTGGQECRQYVPTHQPPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASTSSGQQDSLHWGLGQMEPEGSSLVSAGLGLGLPCDGDSGLKELMLGTPSMFGPKQTTLDFLGLGMAAGGSAGGGLSALITSIGGGSGLDVTAAAASFGNGEFSGKDIGRSS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02021 520 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
Mepo1g02021 520 MobiDBLite consensus disorder prediction 8 30 - -
Mepo1g02021 520 Gene3D Classic Zinc Finger 42 107 - -
Mepo1g02021 520 FunFam protein indeterminate-domain 12-like 41 109 - -
Mepo1g02021 520 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 478 IPR031140 -
Mepo1g02021 520 SMART c2h2final6 103 133 IPR013087 -
Mepo1g02021 520 SMART c2h2final6 62 84 IPR013087 -
Mepo1g02021 520 SMART c2h2final6 138 158 IPR013087 -
Mepo1g02021 520 MobiDBLite consensus disorder prediction 1 45 - -
Mepo1g02021 520 Pfam Zinc finger, C2H2 type 62 84 IPR013087 -
Mepo1g02021 520 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Mepo1g02021 520 Gene3D Classic Zinc Finger 116 197 - -
Mepo1g02021 520 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Mepo1g02021 520 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02021 Mepo-Chr1 20804400 20807548 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02021 2 518 IDZ Gene Family AT3G50700 56.538 1.08e-179 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo1g02021 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02021 K25869 - gmx:100806404 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g02021 1 20804400 20807548 Mepo1g02021 1 20804400 20807548 ECH