Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02000 ATGGGTTGGCTTACCAAGTTTCTAAAGGGTTCGAACCATAAACATTCAGGACGAGGATACAGCGGAAAATATGGACACGACAGAGATTCGGATAATCATGACAATTCCGCGGGTGATTTGAATGATTTTGAGAGAGAAGAAATTGATCGTGCAATTGCGCTCTCTCTTTCAGAGGTTTCAGAGGAAGATCATAAAGGGAAAAAAGTTATCGAAGAAGATTCTGAATCTGAAGATGATGAGTTGTGTCCACTTGATGACGAGGAAGATGACCATGTTGGTGATGTTGAACAAGATGAAGGGGACCATGTTGCTAAAATTCAACAGGAAGAAGACGAAAGTCTCGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTGATTCACCTCCTCCATCTCAAACTGATTCTATATTTCAACCTTTTACAAACCTCTTTTCGCCTGTATACAGAATCTGTGCTGGCTGCAATGTTGAGATTGGTCATGGAAGGTTTTTGAGTTGCATGGGAGCTGTATGGCATCCAGAATGTTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTACGAGTATTCCATGTCTGGAAATCGTCCTTACCATAAATCATGCTACAAGGAGCTGCATCACCCAAGGTGTGATGTTTGCAAGATCTTTATCCCACAAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCCTTCTGGCTACAAAAATATTGTCCATCACACGAGCGTGATGGCACTCCTCGTTGTTGTAGCTGTCAGAGGATGGAGTCAACGGACACAAAGTATCTGTTGCTTGATGACGGTCGAAAGCTGTGTCTTGAGTGTCTTGATTCGGCTATTATGGATACTCATGAATGCCAACCTCTCTATCTTGAAATACAAGAATTTTATGAAGGTTTGCATATGAAAATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAAGCCATGGAGGGCGAAAAGAATGGTCATAATCACCATTTACCTGAAACCAGAGGACTTTGCTTGTCAGAAGAGCAAACTGTCCCCACTATTTTAAGGAGACCAAGTATAGGAGCAGGCTACCGTGTCATTGATATGATAACTGAACCTTTTAGGCTGATACGTCGATGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTACTGACAGGATCAATCCTAGCTCATGAAATGATGCATGCTTGGCTTAGACTTAAAGGCTATGGCAATCTGAGGCCTGAAGTTGAAGAAGGAATATGCCAAGTCTTAGCTCATATGTGGTTAGATTCAGAGATCTATTCCGGCTCCGGAAGTGAAGAAGCATCATCATCTTCGTCTTCATCTTCGTCGTCTTCATCATCACCTTCCTCTACGTCTTCAAAGAAGGGTAAACGGTCCGATTTTGAGAAGGAACTTGGTAAATTTTTTAAACACCAGATTGAGACAGATAGCTCACCAGCCTATGGGGATGGATTTAGAGAGGGTAACCAGGCAGTACTCAAGTATGGGCTTAGACGGACTCTTGACCATATCCGAATTACCGGAAGTTTTCCATAA 1596 0.4229 MGWLTKFLKGSNHKHSGRGYSGKYGHDRDSDNHDNSAGDLNDFEREEIDRAIALSLSEVSEEDHKGKKVIEEDSESEDDELCPLDDEEDDHVGDVEQDEGDHVAKIQQEEDESLDEVQLEEDEQLARAIQESLSIDSPPPSQTDSIFQPFTNLFSPVYRICAGCNVEIGHGRFLSCMGAVWHPECFCCHACKLPITDYEYSMSGNRPYHKSCYKELHHPRCDVCKIFIPQNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESTDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHNHHLPETRGLCLSEEQTVPTILRRPSIGAGYRVIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSGSGSEEASSSSSSSSSSSSSPSSTSSKKGKRSDFEKELGKFFKHQIETDSSPAYGDGFREGNQAVLKYGLRRTLDHIRITGSFP 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02000 531 ProSiteProfiles LIM domain profile. 159 219 IPR001781 -
Mepo1g02000 531 MobiDBLite consensus disorder prediction 1 101 - -
Mepo1g02000 531 Pfam Protein DA1 310 526 IPR022087 -
Mepo1g02000 531 ProSitePatterns LIM zinc-binding domain signature. 161 195 IPR001781 -
Mepo1g02000 531 MobiDBLite consensus disorder prediction 20 72 - -
Mepo1g02000 531 Pfam LIM domain 161 215 IPR001781 -
Mepo1g02000 531 MobiDBLite consensus disorder prediction 451 474 - -
Mepo1g02000 531 CDD LIM_DA1 161 213 - -
Mepo1g02000 531 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 188 243 - -
Mepo1g02000 531 MobiDBLite consensus disorder prediction 451 479 - -
Mepo1g02000 531 Coils Coil 103 123 - -
Mepo1g02000 531 PANTHER PROTEIN DA1-RELATED 2 3 531 IPR045218 -
Mepo1g02000 531 FunFam Protein DA1-related 1 155 214 - -
Mepo1g02000 531 SMART uim 43 62 IPR003903 -
Mepo1g02000 531 SMART uim 120 139 IPR003903 -
Mepo1g02000 531 SMART lim_4 160 212 IPR001781 -
Mepo1g02000 531 Gene3D Cysteine Rich Protein 155 219 - -
Mepo1g02000 531 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 120 139 IPR003903 -
Mepo1g02000 531 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 156 186 - -
Mepo1g02000 531 MobiDBLite consensus disorder prediction 73 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02000 Mepo-Chr1 20521175 20525696 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo1g02000 DA1-like 3.6e-104 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g02000 - - gmx:100806605 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g02000 1 20521175 20525696 Mepo1g02000 1 20521175 20525696 ECH
Mepo1g02000 1 20521175 20525696 Mepo5g00829 5 7964928 7970945 ECH
Mepo5g00829 5 7964928 7970945 Mepo1g02000 1 20521175 20525696 PCT