Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01994 ATGGAAATTCTGTGTACTGATTGCTCTGAGACAAATCTAGGAGCAGCTTACGGACCTAATGAAGAACATATTTGCGTTGAAAATCACGAATATGATATTTCAAAACTCGATGATGAACTCAGTGACAGTTCATTTGCAGTGGAAGAAGCTGCTACTAAGGATCGACAATGCCAAGCATATATCAAAGACAAGGGAAGGCAGTGCGTGAGAACCACAATTGGTAACAATATATACTGTTGCGTGCATTTCTTAAGTAAAAAAGAAAGGCGTGTTAAAGCAATCACTCCATTTTGTGGAGGTACAACTGCTGCTGGTACTAGATGTAAGAATCATTCCCTTCCCAGATTATCTTTTTGTAAGAAACATCTGCACAAAGCTGAGATGGGCCAGACCTCAAATTCAATTTCTCGTACATTAAAGAGGAGAGCTGAAGAAAATTGCAGTGGTTCCCAGAGCCTGATTTGCAAAGACTCGATGTTTGTACATCCGGAAAGTCCATTGGAGATCAATCCAGAGTCGGTCGTCAATGATGATGATTCTTTCTTCGCAAAGAACATATTTGGCGAAACGCTCAAGCTTTCTGGTAATGATCAGTGGACAGGCTCTCCTAGCTATGGTAATGATCATAATGAAGACTCTTGTATTGATAATGAGAGTGCTGTTAAGTGTAAGGTCTGCTTTGAAGAATTTTCTGATAACCAAACACTTGGCAACCATTGGATGGAAAGTCATGAAAAGGAAGCACAGTGGTTGTTCAGAGGTTATGCATGTGCCTTTTGTTTTGATTCCTTCACTAACAAAAAACTATTGGAATCACATGTTCAGAAGAGACACTATGGGCAGTTTGGTGAACACTGCTTGCTTTTTCTATGTATTCCTTGTGGTTGTCATTTTGGAAATATAGAGGAATTATGGTTGCATGTTAAGTCAGTTCACCCTGCCGAATTTAAGCTTTCGATAACTCATGAGCAGCTAACATTGTCTACTGGTGATGATTCTCCTAAAATGATTGAGCAGGGAAATGAAGCTTCTTTGGGCAATGATAATTCCGAGAATCAAAGTAGTTCACGGAAGTTTAGTTGCAGGTTTTGTGATTTGAAATTTGATTTACTACCTGATATCGGTCGCCATCATCAAGCTGCTCATATGGAGCGCGATCCAGCCAGCAGGCGCTTGGCAAACAGTGGAGTTCGTTATTATGCTCACAGACTAAAATCTGGCAGACTTACCCGTCCTAATCCTAAATTTAAAGGAGGTTTGGAAGAAGAATCAAATAGGACCAGGAGAAGGGCTAAAGCTAATTTCAAGGAAAGAAATCAGGCAAATAAGTTGCTTGAGATGGGAGAAATATCCATCCAGCCTCATGTAGTTGAATTGGAAGAATCTCAATGCTTAGAGTCTGCAAATATTTTGTTTCGTTTAATTACCAGAAAGGCTGTATCTGAAGGCAGCAAAACATTGCAGTGA 1467 0.3995 MEILCTDCSETNLGAAYGPNEEHICVENHEYDISKLDDELSDSSFAVEEAATKDRQCQAYIKDKGRQCVRTTIGNNIYCCVHFLSKKERRVKAITPFCGGTTAAGTRCKNHSLPRLSFCKKHLHKAEMGQTSNSISRTLKRRAEENCSGSQSLICKDSMFVHPESPLEINPESVVNDDDSFFAKNIFGETLKLSGNDQWTGSPSYGNDHNEDSCIDNESAVKCKVCFEEFSDNQTLGNHWMESHEKEAQWLFRGYACAFCFDSFTNKKLLESHVQKRHYGQFGEHCLLFLCIPCGCHFGNIEELWLHVKSVHPAEFKLSITHEQLTLSTGDDSPKMIEQGNEASLGNDNSENQSSSRKFSCRFCDLKFDLLPDIGRHHQAAHMERDPASRRLANSGVRYYAHRLKSGRLTRPNPKFKGGLEEESNRTRRRAKANFKERNQANKLLEMGEISIQPHVVELEESQCLESANILFRLITRKAVSEGSKTLQ 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01994 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 289 317 IPR013087 -
Mepo1g01994 488 MobiDBLite consensus disorder prediction 329 354 - -
Mepo1g01994 488 MobiDBLite consensus disorder prediction 408 430 - -
Mepo1g01994 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 221 249 IPR013087 -
Mepo1g01994 488 Pfam Zinc finger C2H2-type, 3 repeats 257 383 IPR040689 -
Mepo1g01994 488 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 207 478 - -
Mepo1g01994 488 MobiDBLite consensus disorder prediction 415 430 - -
Mepo1g01994 488 SMART c2h2final6 255 278 IPR013087 -
Mepo1g01994 488 SMART c2h2final6 289 312 IPR013087 -
Mepo1g01994 488 SMART c2h2final6 359 382 IPR013087 -
Mepo1g01994 488 SMART c2h2final6 221 244 IPR013087 -
Mepo1g01994 488 ProSitePatterns Zinc finger C2H2 type domain signature. 361 382 IPR013087 -
Mepo1g01994 488 Gene3D Classic Zinc Finger 202 282 - -
Mepo1g01994 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 283 IPR013087 -
Mepo1g01994 488 ProSitePatterns Zinc finger C2H2 type domain signature. 257 278 IPR013087 -
Mepo1g01994 488 ProSitePatterns Zinc finger C2H2 type domain signature. 291 312 IPR013087 -
Mepo1g01994 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 359 387 IPR013087 -
Mepo1g01994 488 ProSitePatterns Zinc finger C2H2 type domain signature. 223 244 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01994 Mepo-Chr1 20424023 20427080 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01994 249 445 C2H2 Transcription Factor Family AT2G23740 49.239 3.24e-54 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo1g01994 zf-C2H2_3rep 1.6e-54 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01994 - - mtr:25501647 864.374