Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01972 ATGACATCTGAGAGCAATTACAATCATGCAACAGTTGATAACTTTATCAAATCTGGAAATGGTGAAGCTTTTCGTAGTGCTATTAACGACCATTCTGCAATGGTGAATGGCTTTCTCAATTCTGGAAAAGGTGGACTTATTCGTAGTTTTCATCAACAAGTGGATAGTCAGCAGCAACATCATACTGCAGGTACTGGATGGATGAGAATTACCTCCACATGCTTTGGTAATACTGGCGACGTGACGTCCGTGAAAGTGATTAGGAATAAGCAAACTAGTCAATCACAACGTTACGGTTTTATTGAGTTTAATACTCGTGCTGCTGCTGAGAGAGTGCTTCAGACATACAACGGAACCATTATGCCAAATGGTGATTTGGCTGCGAATGTTACTGATTACCTTCTTCAACAGACTTTTAGGGCATGTTATAACTCGGTGAAGGGGGCAAAAGTTGTGATTGATAGGCTTACAGGTAGGTCTAAGGGTTATGGTTTTATGAAATTTGTTGATGAAAATAAGCAGATAAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTGA 561 0.4029 MTSESNYNHATVDNFIKSGNGEAFRSAINDHSAMVNGFLNSGKGGLIRSFHQQVDSQQQHHTAGTGWMRITSTCFGNTGDVTSVKVIRNKQTSQSQRYGFIEFNTRAAAERVLQTYNGTIMPNGDLAANVTDYLLQQTFRACYNSVKGAKVVIDRLTGRSKGYGFMKFVDENKQIRAMTEMQGVLC 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01972 186 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 124 186 - -
Mepo1g01972 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 183 IPR000504 GO:0003723
Mepo1g01972 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 123 IPR000504 GO:0003723
Mepo1g01972 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 186 IPR000504 GO:0003723
Mepo1g01972 186 SUPERFAMILY RNA-binding domain, RBD 74 184 IPR035979 GO:0003676
Mepo1g01972 186 Gene3D - 125 186 IPR012677 -
Mepo1g01972 186 Gene3D - 69 124 IPR012677 -
Mepo1g01972 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 75 133 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01972 Mepo-Chr1 20124475 20125299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01972 75 185 Eukaryotic Initiation Factors Gene Family AT1G22760 28.889 1.58e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01972 - - bhj:120082906 171.785