Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01950 ATGGATAGAGAGTTTATTCGCCCATGTGCAGCTTGCAAGCATCTCCATAGGAAGTGCAACCCTAACTGTGTCTTAGCTCCGTACTTTCCAAAGGACAACCCGGAGCGTTTCATCAAGGTACACTCGGTGTTTGGAAAGAGAAATGTGACTAATCTCTTGAAAAAACGGGACGTTTCACATCATGAACAAGTCGTTGAATCCTTGGTGTATGAGGCTGATGCCTGGTTGAGGGATCCTATCCATGGCTGTGCGGGTCCAGCAAATGATCTTCAAGGTAGGTTGAATGAAGCTCAAACGGAGCTCAAGAGTGTGAAGAATGAACTGGCCAAATACCTCAGTCCTCAGGTCGTTGAATTTGTTCTCGCCTTTCCTGATTGTTTCGGCTTTAAGCCAAATTCCTCTCCACCGACTATGACAGTCGGTGAAGGACAATTGGGTTTTAATCAGCTGCCAGCTGCTGAGTTAACGACTCAACAGCTTCACAACTTAGAAGTTCTAAAACAAAAGCTTCTTAGTGGCCCCAATGGTGATGATGGGTTAACAGGATTTCTGATGGATGTTAATGTTCCTGTTGAAAATGGTGGCACTAGTACTAGGTCCCACCCTGTTGATGGTGGGTCTGGGTTGGCGGGATCCCAGATGCTTCCTCATGTTCCTCCTGTTGATGCTCCTTCTGTGCTTCCTTCTTCTAGGGCTGATAATTTTGACACTAGCACAAGCAACCAGATAACTCTATTCCTTTTATCTATATCAATACTAGATCTAAAGAAATTAGTTATGGCAAAAGAGATTATTCGCCCGTGTGCAGCGCTGGTTGGGTTGGCAGGATCCCAAATGCTTCCTTCTTCTAGGGCTGATGTTCCTCCTGTTAATGCTCCTTCTGTGTTTCCTTCTTCTAGGGTTGATACTTTTGACAATGGTAGCAACCAGGTTCAATTGTGGAGGGAGCCACAACTTATGGCAGAAGAGATTATTCGCCTATGTGCAGCGTGCAAGCATCAACGTCGAAGGTGTGACGAAACAAGCTGCAACCTAGCTCCTTACTTTCCAGCGGACAACCTACAACGTTTCAACCTCGTACACTTAGTGTTTGGAAGGAGCAAAGTGTCCAAAATATTGCAAGAACAAGACATTTCCAATCGCAAACAAGTCGCTGATTCTTTGGTGTATGAGGCTGAGGCACGTTTAAGGGACAATGTTTATGGTTGTGTTGGTTCTGCATCCTTTCTTGAAAAGAAGTTGAAGGATGTTCAAGATGAACTCAAGAAAGTGAAGAATGAACTGACTAAATACCTTGATCTCGAGATCATTCAAGAGGTTTTGTCCAATCCTGGTCGTTTCGGCTTTGCACCAAGCCCTAATCAAAATCCACAAGGAAATCTTGTTTCTTAG 1392 0.4447 MDREFIRPCAACKHLHRKCNPNCVLAPYFPKDNPERFIKVHSVFGKRNVTNLLKKRDVSHHEQVVESLVYEADAWLRDPIHGCAGPANDLQGRLNEAQTELKSVKNELAKYLSPQVVEFVLAFPDCFGFKPNSSPPTMTVGEGQLGFNQLPAAELTTQQLHNLEVLKQKLLSGPNGDDGLTGFLMDVNVPVENGGTSTRSHPVDGGSGLAGSQMLPHVPPVDAPSVLPSSRADNFDTSTSNQITLFLLSISILDLKKLVMAKEIIRPCAALVGLAGSQMLPSSRADVPPVNAPSVFPSSRVDTFDNGSNQVQLWREPQLMAEEIIRLCAACKHQRRRCDETSCNLAPYFPADNLQRFNLVHLVFGRSKVSKILQEQDISNRKQVADSLVYEAEARLRDNVYGCVGSASFLEKKLKDVQDELKKVKNELTKYLDLEIIQEVLSNPGRFGFAPSPNQNPQGNLVS 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01950 463 Coils Coil 87 107 - -
Mepo1g01950 463 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Mepo1g01950 463 Coils Coil 407 434 - -
Mepo1g01950 463 ProSiteProfiles LOB domain profile. 326 428 IPR004883 -
Mepo1g01950 463 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 142 - -
Mepo1g01950 463 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Mepo1g01950 463 Pfam Lateral organ boundaries (LOB) domain 328 425 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01950 Mepo-Chr1 19738418 19745617 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01950 328 455 AS2 family AT5G66870 46.094 3.18e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mepo1g01950 LOB 5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01950 - - mtr:11411349 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01950 1 19738418 19745617 Mepo1g01950 1 19738418 19745617 ECH
Mepo1g01950 1 19738418 19745617 Mepo5g00792 5 7552399 7554901 PCT