Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01903 ATGTCAAAAATGGTGGCGGTTGATGAAAAGAAGAGGGATCAAATGGTGAAAAAAGATGTGATGGAATTTCCACGAAATGATGATCGTGGAGTGACTGTTGCATTTTATGGGAAAGAGGTGTATGAGGGTGTTCCTATGGCACATTTCTCTCCAAAGTCTCCTTTAAATGCAACATTAGATGAGACACAATCACAAAAGTTTGCGAGTTCAACTAAAGGGGCAACCGATGGAACATATTCTCGTGGCGAGGCGATATCATCTGCTGTGATTCACGCCGAAGGACTCCGATCACATTTGGAACCAGAATTCCCTAGTTTTGTGAAGTCGTTGGTCAGATCACATGTAGCCAGTTGTTTTTGGATGGGGTTGCCTGTGTCGTTTTGTAAAAGACATTTACCTGATAAAGATACAACCATCACATTAGAAGATGAATATGGTAAAGAATACAAAACAAAATACATTGCATGTAAGACAGGATTGAGTGCTGGTTGGAGACAGTTTTCTGCTGTGCATAAATTGCTAGAAGGTGATGTCGTGGTATTACAATTAATTGAACCCACCAAATTTAAGGTAATAGTTTTTATTTTTATTTTTATTTTTATTCATATTTTATTTAATTGTTCTTTTGTTAGAAGAAACAACATAGAACCTGATGTTTTAGCATGTAATAGCCCAAAAAGAAAAAGCGTTAAACCTGTTCCACAAGACATCCAAAAGAAAAAGAAAATGATTGTATCAAACATGGAGACTAAGCCTAAACAATATACTGAGCGATATGAAATTGATAGCGACGAAGCTTTGTCAGAAATATTTGAGGGATTTAAAATGCCTGAATTTAAAGAGTTAAAAGGTTTTGAAAATTTCAGAATCATAGTTGATGGAAGGCCAATCGAAGAAGAACTCTCTATAGAAGTTCGAAACAAGTACTACAAACTATGTCACAGCCAACAAGTTTTTCTTCATGATAATCTCATCAAAGGCTTGCATTATAAGCTGATTGCTGGAATTATATCTGAAATTGTTAATATTGCTGATGCAATAAAAGTCAGTGTGATATCTACACCGCGTGTTGAATTTTCTAGTTGGGATAAAACATTGCTAGCTTTTGAACATTTGGGCATGAATGTTGAATTTTTAAGAGTTCGGTTGCGCAGGCTTGTTAGCTTAGCTTATGAAACCGGCGATGCCTCAGAGATTAGAAGATATATGGCCTATAGAACTGAACAACACGGTCAGGTAGAGGATGAAATAAAGAACATGGAAACGAAGCTTGAAGAATTGAAGGAAGCTTGTAGCGGCTTTACTAGTTATCTCGAGAGTTTAAAATCTAAAGCTGAAAAGCATGAACATAAATTTCAGAAAGAAGTTGCTGCTAATTGGTGA 1383 0.3623 MSKMVAVDEKKRDQMVKKDVMEFPRNDDRGVTVAFYGKEVYEGVPMAHFSPKSPLNATLDETQSQKFASSTKGATDGTYSRGEAISSAVIHAEGLRSHLEPEFPSFVKSLVRSHVASCFWMGLPVSFCKRHLPDKDTTITLEDEYGKEYKTKYIACKTGLSAGWRQFSAVHKLLEGDVVVLQLIEPTKFKVIVFIFIFIFIHILFNCSFVRRNNIEPDVLACNSPKRKSVKPVPQDIQKKKKMIVSNMETKPKQYTERYEIDSDEALSEIFEGFKMPEFKELKGFENFRIIVDGRPIEEELSIEVRNKYYKLCHSQQVFLHDNLIKGLHYKLIAGIISEIVNIADAIKVSVISTPRVEFSSWDKTLLAFEHLGMNVEFLRVRLRRLVSLAYETGDASEIRRYMAYRTEQHGQVEDEIKNMETKLEELKEACSGFTSYLESLKSKAEKHEHKFQKEVAANW 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01903 460 CDD B3_DNA 104 187 IPR003340 GO:0003677
Mepo1g01903 460 SMART B3_2 106 197 IPR003340 GO:0003677
Mepo1g01903 460 Gene3D - 89 197 IPR015300 -
Mepo1g01903 460 Pfam B3 DNA binding domain 106 195 IPR003340 GO:0003677
Mepo1g01903 460 ProSiteProfiles B3 DNA-binding domain profile. 106 197 IPR003340 GO:0003677
Mepo1g01903 460 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 90 194 IPR044837 -
Mepo1g01903 460 SUPERFAMILY DNA-binding pseudobarrel domain 101 195 IPR015300 -
Mepo1g01903 460 Coils Coil 410 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01903 Mepo-Chr1 19118027 19120412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01903 79 194 B3 DNA Binding Superfamily AT3G19184 46.552 4.34e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo1g01903 B3 1.6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01903 - - mtr:120577567 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01903 1 19118027 19120412 Mepo1g01903 1 19118027 19120412 ECH