Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01895 ATGGAGCAACGAAAGCTTGTGGTTTTGGGTATCCCTTGGGATGTTGATACTGATGGGTTGAAAGAATATATGAGCAAATTTGGTGAGCTAGAAGATTGTATTGTTATGAAGGAACGGTCAACTGGCCGATCTCGCGGTTTTGGATATGTGACATTCGCATCGGTGGATGATGCTAAGAATGTGCTATCCAGTGAACACAGTCTTGGCGACAGGACGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCAGTCAAAAAGGTTACCAGAATCTTTGTGGCCAGGATTGCTCCATCAGTAACAGAAGAAACTTTTAGGAGTCATTTTGAGAAATACGGTGATATAACAGATTTATATATGCCAAAGGATCGTGGATCAAAAACACATCGGGGAATTGGTTTTATCACTTTCGCAAGTGCAGATTCTGTGGAGAGCTTGATGAAAGAAACCCATGAACTGGGGGGTTCTGATGTGGTGGTTGACCGAGCAACACCTAAGGAAGATGATTTCAAGCCAATTGGCAGAACCAGAACACCACAATTAGGATATAGTGCATATAATACTTATATTCCTGCATCAACTAGATATGCAGCACTTGGTGCTCCAACTATGTATGATCGTCCAAGTTCTATTTATGGAAGGGGAGAACCTGCTCGTGGGATAAGCAAAAAGATTTTTGTTGGCCGTCTTCCCCCGGTGGCAACCACTGAAGATCTTCGCCTGTATTTTGGAAGATTTGGCCATATCTTAGATGTTTATATTCCTAGGGATGTCAAGAGACCTGGTCATAGAGGTTTTGGTTTTGTGACTTTTGCGGACAGTGGTGTTGCAGATCGTGTCTCTCGAAGGCCTCATGAGATTTGTGGACACGAGGTTGCCATAGATTCAGCCGCACCTCTTGATGAAGCAGGGCCCAGTGGGAATACTATGTTGAATAGCATGGATTCTTTCAGGGGATATGGCGGTCCGGTGAGGCCTTATTTTGATGAAAGTCCTGTGAGGCCTTATGGGAGAATGTACGATAGCCTGGACTTCGATGATCAGTTGGGTTATGGCGTTGCTAGTAGAAGACCATCAAGAACAACAGATTGGAGGTATAGACCATACTAG 1119 0.4468 MEQRKLVVLGIPWDVDTDGLKEYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKNVLSSEHSLGDRTLEVKVATPKEEMRAPVKKVTRIFVARIAPSVTEETFRSHFEKYGDITDLYMPKDRGSKTHRGIGFITFASADSVESLMKETHELGGSDVVVDRATPKEDDFKPIGRTRTPQLGYSAYNTYIPASTRYAALGAPTMYDRPSSIYGRGEPARGISKKIFVGRLPPVATTEDLRLYFGRFGHILDVYIPRDVKRPGHRGFGFVTFADSGVADRVSRRPHEICGHEVAIDSAAPLDEAGPSGNTMLNSMDSFRGYGGPVRPYFDESPVRPYGRMYDSLDFDDQLGYGVASRRPSRTTDWRYRPY 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01895 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Mepo1g01895 372 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Mepo1g01895 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 153 IPR000504 GO:0003723
Mepo1g01895 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 72 IPR000504 GO:0003723
Mepo1g01895 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Mepo1g01895 372 SUPERFAMILY RNA-binding domain, RBD 92 286 IPR035979 GO:0003676
Mepo1g01895 372 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Mepo1g01895 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 302 IPR000504 GO:0003723
Mepo1g01895 372 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Mepo1g01895 372 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 2 201 - -
Mepo1g01895 372 Gene3D - 88 175 IPR012677 -
Mepo1g01895 372 Gene3D - 1 87 IPR012677 -
Mepo1g01895 372 Gene3D - 224 306 IPR012677 -
Mepo1g01895 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Mepo1g01895 372 SMART rrm1_1 93 164 IPR000504 GO:0003723
Mepo1g01895 372 SMART rrm1_1 5 76 IPR000504 GO:0003723
Mepo1g01895 372 SMART rrm1_1 227 298 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01895 Mepo-Chr1 19040422 19046912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01895 6 285 Eukaryotic Initiation Factors Gene Family AT3G16380 22.727 1.66e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01895 K14411 - gmx:100795240 598.201