Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01894 ATGGATGTCGACATAGTGAAAACTGACGGAAGCATGGACATGATAGCAATGATGATGCAAATGGAAAAGTTCCCTGAATTCTCTGATCAACCTTTTTATAACACTCCCACTACTTACCAAGAAATCACCAACAACACTGTTCCATTATTTAACCTTAACCAAAATGCACTATCATCTCCACAAACTTTGAATAATATTGATCCAGTTCTACACTCCAATGTCAATTTCCAACAACACTTGAATATCACACTACCACCTCTTCAAACTAACTCTTCATCATTTCCTTACTCGCACTCGAATTCTTCTGAAAAGAAGAATTCGATGGCAGCGATGAGGGAAATGATATTTAGAATAGCAGTGATGCAACCTATACATATCGATCCGGAATCCGTTAGGCCGCCGAAGAGAAGGAATGTGAAGATATCAAAGGATCCACAAAGTGTAGCTGCTAGGCATAGAAGGGAAAGGATAAGTGAAAGGATAAGGATATTGCAAAGATTAGTACCTGGTGGAACCAAAATGGACACTGCTTCAATGTTAGATGAAGCTATACATTATGTGAAGTTTTTGAAGAAACAAGTTCACACGTTGGAACAAGTAGGGGCTAATAATAGATCACAATCACACATTGGTGGTGGATTCATTGGAGGGAATAATATGATGAACAATTTTAATAATGTGAATTATAATTCTAGTTTGATGATGAAGGGTTGTCAACCTTTTCAAATGGTGGGTTCCACTTCCAAACAATTGCTTAGCTAG 762 0.3766 MDVDIVKTDGSMDMIAMMMQMEKFPEFSDQPFYNTPTTYQEITNNTVPLFNLNQNALSSPQTLNNIDPVLHSNVNFQQHLNITLPPLQTNSSSFPYSHSNSSEKKNSMAAMREMIFRIAVMQPIHIDPESVRPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVHTLEQVGANNRSQSHIGGGFIGGNNMMNNFNNVNYNSSLMMKGCQPFQMVGSTSKQLLS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01894 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 190 IPR011598 GO:0046983
Mepo1g01894 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 202 IPR036638 GO:0046983
Mepo1g01894 253 Gene3D - 140 210 IPR036638 GO:0046983
Mepo1g01894 253 SMART finulus 147 196 IPR011598 GO:0046983
Mepo1g01894 253 Pfam Helix-loop-helix DNA-binding domain 151 190 IPR011598 GO:0046983
Mepo1g01894 253 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 43 247 IPR045843 GO:0003700|GO:0006355
Mepo1g01894 253 FunFam BHLH transcription factor 144 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01894 Mepo-Chr1 19018916 19020171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01894 17 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 57.843 6.71e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo1g01894 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01894 - - gmx:100812308 255.373