Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01849 ATGGATCGGATCAAAGGTCCATGGAGCCCCGAAGAAGACGAATCCTTAACAAAACTCGTTGATCGTTACGGTCCTCGTAACTGGTCACTCATCAGCCGTGCTATTCCTGGTCGGAGTGGTAAATCTTGCAGGCTCAGATGGTGTAATCAGCTTTCTCCTCAAGTTGAGCATCGTGCTTTTTCACCTGAAGAAGATAACATCATTATCAGAGCCCATGCTCAGTTCGGTAACAAATGGGCTACTATAGCCCGTTTGTTATCGGGCCGAACCGATAACGCTATCAAAAACCACTGGAACTCTACGCTCAAACGGAAGTGTTCATCTTTCATCGGTTCCGATGATCGCGATTTTAATCCTCAGCCGCTTAAACGCTCTGCTTCGGTCGGTGCTCCGGGGAGTCCGTCTGGTTCTGATTTAAGTGATTCTGGTGTTCTAACTGTTTTTCGTCCTGTTCCGATTCGTTTGCCTGTGGAAACTACACCGGAACCCGAAACGGTGACGGTGCCGGAAGCGGTGGTGGAGGAGGAGGATGACGGTCCTTTAACTTCGCTGTCGCTTTCTCTTCCAGGTGTGGATGCTGCGGTGCCGATTAGTCCTTCGCCGACGAGTGCTGTAACGGCGAAAGTGGCGGCCAAAGCTTCTGAAGAGGTTGGAATTGGAGCGTTGAATTTGAGTGGTGAATTTATGGCGGTTATGCAAGAGATGATAAAGAATGAAGTGAGGAGTTATATGGAAGAGAGAAATGGAATGTGTTTTCAAGGAGTTGATAGGCTTAGAAATGTTTCTGTTTCTGCTAAGCCAATTGGGATTAACAGGGTTGATGGATGA 828 0.4795 MDRIKGPWSPEEDESLTKLVDRYGPRNWSLISRAIPGRSGKSCRLRWCNQLSPQVEHRAFSPEEDNIIIRAHAQFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSFIGSDDRDFNPQPLKRSASVGAPGSPSGSDLSDSGVLTVFRPVPIRLPVETTPEPETVTVPEAVVEEEDDGPLTSLSLSLPGVDAAVPISPSPTSAVTAKVAAKASEEVGIGALNLSGEFMAVMQEMIKNEVRSYMEERNGMCFQGVDRLRNVSVSAKPIGINRVDG 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01849 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Mepo1g01849 275 FunFam Transcription factor MYB44 59 105 - -
Mepo1g01849 275 Pfam Myb-like DNA-binding domain 8 65 - -
Mepo1g01849 275 SMART sant 56 104 IPR001005 -
Mepo1g01849 275 SMART sant 4 53 IPR001005 -
Mepo1g01849 275 CDD SANT 7 49 IPR001005 -
Mepo1g01849 275 Gene3D - 58 124 - -
Mepo1g01849 275 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Mepo1g01849 275 CDD SANT 59 102 IPR001005 -
Mepo1g01849 275 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Mepo1g01849 275 FunFam MYB transcription factor 5 56 - -
Mepo1g01849 275 MobiDBLite consensus disorder prediction 110 143 - -
Mepo1g01849 275 Gene3D - 4 56 - -
Mepo1g01849 275 PANTHER MYB PROTEIN-RELATED 5 172 - -
Mepo1g01849 275 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Mepo1g01849 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01849 Mepo-Chr1 18408961 18410308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01849 2 274 MYB Transcription Factor Family AT5G67300 50.809 1.29e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo1g01849 Myb_DNA-bind_6 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01849 K09422 - gmx:100806145 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00687 5 6629628 6631604 Mepo1g01849 1 18408961 18410308 ECH
Mepo1g01849 1 18408961 18410308 Mepo1g01849 1 18408961 18410308 ECH
Mepo1g01849 1 18408961 18410308 Mepo5g00687 5 6629628 6631604 PCT