LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo1g01823	ATGCGCACGAATCCGAAGCAAGCACCACAGCTGCGTTTGTTACTAGTGTGCACCTTGATAAGCTTACATGCGCCGGTAGCGCAACCTCCTAACGTACGCATACCCACCCAATCCAACGAATCTAATACCACTACCACTATCATCGTTTCCCAGATCTCATCAACAATGTCCAAAGCTCGCGTCTACACCGATGTCAATGTTATTCGCCCCAAAGAGTATTGGGACTATGAATCTCTCACTGTTCAATGGGGGGATCAAGATGATTATGAGGTTGTACGAAAAGTAGGAAGGGGGAAATATAGTGAGGTGTTTGAAGGCATAAATGTTAACAGCAATGAGCGCTGTGTTATCAAGATTCTCAAGCCCGTAAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGCCCAAACATTGTCAAGCTTCTTGATATTGTCAGAGACCAGCACTCTAAAACTCCAAGTTTAATATTTGAGTACGTCAACAGTACAGATTTTAAAGTTCTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGGCCTTGGATTACTGCCACTCTCAAGGCATAATGCATAGAGATGTCAAACCACACAATGTTATGATAGATCATGAATTGCGAAAACTCCGCTTGATAGACTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTGGCTTCAAGATACTTTAAGGGCCCTGAACTTCTAGTTGATTTGCAAGACTATGATTACTCATTAGACATGTGGAGCCTTGGCTGTATGTTTGCCGGAATGATATTCCGCAAGGAACCTTTCTTTTACGGTCACGACAACCACGACCAGCTTGTAAAAATAGCTAAGGTGCTTGGAACTGATGAACTAAATGCATATCTGAACAAGTATCATCTGGAGCTAGATCCTCAACTTGATGCACTAGTTGGAAGGCACAGTCGCAAACCTTGGTCTAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCCGAGGCAATCGATTATCTTGATAAGCTCCTTCGATATGACCACCAGGACAGGCTAACAGCAAGAGAAGCAATGGCACATCCGTATTTCTCTCAGGTAAGGGCAGCAGAGAGTAGCAGAATGAGGACACAGTAA	1167	0.4225	MRTNPKQAPQLRLLLVCTLISLHAPVAQPPNVRIPTQSNESNTTTTIIVSQISSTMSKARVYTDVNVIRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDYLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ	388

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mepo1g01823	388	FunFam	Casein kinase II subunit alpha	166	377	-	-
Mepo1g01823	388	SUPERFAMILY	Protein kinase-like (PK-like)	58	378	IPR011009	-
Mepo1g01823	388	ProSitePatterns	Protein kinases ATP-binding region signature.	95	118	IPR017441	GO:0005524
Mepo1g01823	388	FunFam	Casein kinase II subunit alpha	75	165	-	-
Mepo1g01823	388	Gene3D	Phosphorylase Kinase; domain 1	80	138	-	-
Mepo1g01823	388	Gene3D	Phosphorylase Kinase; domain 1	142	165	-	-
Mepo1g01823	388	CDD	STKc_CK2_alpha	70	374	IPR045216	GO:0004674\|GO:0006468
Mepo1g01823	388	Pfam	Protein kinase domain	89	374	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Mepo1g01823	388	PANTHER	CASEIN KINASE II SUBUNIT ALPHA	39	384	IPR045216	GO:0004674\|GO:0006468
Mepo1g01823	388	SMART	serkin_6	89	374	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo1g01823	Mepo-Chr1	18134042	18139756	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo1g01823	87	374	Core Cell Cycle Gene Families	AT1G76540	29.450	8.39e-43	150

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CK2	Mepo1g01823		Pkinase	7.1e-65	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo1g01823	K03097		-	gmx:100819679	696.812

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo1g01823	1	18134042	18139756	Mepo1g01823	1	18134042	18139756	ECH

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