Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01793 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCACTGAAAGCTGGAGTAGTCAAACATGGGGCTGGAAAATGGCGCACAATACTTATGGATCCCGAGTTCAGTTCCATTTTGCGTACGCGTTCGAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTCACTGCAATATGGGGATCCCGGCAGAAGGCAAAACTTGCCCTTAAAAACAGCCCTCCAGCCCCCAAAACTGGCAATAACCAATTGGCCTTGAGTAATGTAGTTCAACGTGAAGACTTTCTCGATATTAAGCCCCTGACAATTTCTGGTGGAACATTGCAATCTCCTAAGTCCCTAACAATTTGTAGTGGAACATTGCAATCTCCCAATTCAAAAGAACAAGTATCAAGGTTGGGAGATAATAATGTATTAGAGGCTATTGTCAATATGAAGGAGCCAAAGGGTTCTGACAAGGCTGCCATTGCTTCTTACATAGAGGAAAAATATCAGTGTCCACCAAATCTTAGAAAGTTATTGTCAGCAAAATTGCAGCAGATGGTGACAAGTGGCAAAATAGTCCAGGAAAAGCACAAGTACAAAATTATGCCAAGTTCAGCAGTTTCCGAGAAAAGAGGAAGCTCTTCACTGATGCTTGTGGAAGCGAGGCCCAAAGATTCTCCGGAGGTGGAGAAGATATGTGATGTCAACATCCTTTCAAAATCCCAAATTGAGGCAGAGCTATCAAAAGTGAGGGGGATGTCAGCTCAAGAGGCGGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGTTGCCATTGCACAGGCCGAGGCAGCAGCTAGGGAGGCGGAGATTGCAGAAGCTGAAGCTGAGGCTGCTCAAGTCTTTGCAAAAGCAGCGATGAAGGCACTCAAATGCAAAATGCTTCATATTTGGTAG 930 0.4495 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTAIWGSRQKAKLALKNSPPAPKTGNNQLALSNVVQREDFLDIKPLTISGGTLQSPKSLTICSGTLQSPNSKEQVSRLGDNNVLEAIVNMKEPKGSDKAAIASYIEEKYQCPPNLRKLLSAKLQQMVTSGKIVQEKHKYKIMPSSAVSEKRGSSSLMLVEARPKDSPEVEKICDVNILSKSQIEAELSKVRGMSAQEAAAAAAKAVAEAEVAIAQAEAAAREAEIAEAEAEAAQVFAKAAMKALKCKMLHIW 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01793 309 Pfam linker histone H1 and H5 family 140 193 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo1g01793 309 SUPERFAMILY Homeodomain-like 2 64 IPR009057 -
Mepo1g01793 309 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Mepo1g01793 309 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 131 200 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo1g01793 309 Gene3D - 2 59 - -
Mepo1g01793 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Mepo1g01793 309 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Mepo1g01793 309 CDD SANT_TRF 6 57 - -
Mepo1g01793 309 FunFam Telomere repeat-binding factor 1 2 58 - -
Mepo1g01793 309 SMART sant 4 59 IPR001005 -
Mepo1g01793 309 SMART h15plus2 133 195 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mepo1g01793 309 Gene3D - 137 211 IPR036388 -
Mepo1g01793 309 Coils Coil 256 295 - -
Mepo1g01793 309 PANTHER SINGLE MYB HISTONE 4 1 304 IPR044597 GO:0003691
Mepo1g01793 309 SUPERFAMILY "Winged helix" DNA-binding domain 138 209 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01793 Mepo-Chr1 17809074 17813059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01793 1 309 Single Myb Histone (SMH) Gene Family AT5G67580 50.968 6.80e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mepo1g01793 Linker_histone 3.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01793 K09422 - gmx:100779583 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00633 5 5923387 5930174 Mepo1g01793 1 17809074 17813059 PCT