Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01762 ATGGGGAGAGCTCCTTGTTGTGACAAAGCCAATGTCAAGAAAGGTCCATGGTCACCTGAAGAAGATTCCAAACTCAAAGCTTATATCCAACAACATGGTACAGGTGGTAACTGGATAGCCCTACCAAAGAAAATAGTAGGCCTCAAAAGGTGTGGAAAAAGTTGTCGTCTAAGATGGCTAAATTATCTTCGTCCGAACCTTAAACATGGGAGTTTCTCCGAAGAAGAAGACAACATTATTTGCAGCCTCTATGTTAATATTGGAAGCAGGTGGTCCATTATAGCAGCGCAATTACCAGGACGAACAGATAATGATATAAAGAACTATTGGAACACAAAGTTGAAGAAGAAACTTTTAACAAAGCAAAGGAAGGAGCAACAATCTCAAGCTTGCCGAGTTTTCAACCAAAATCAAGAGATCAAAAGAGAGAGTGGAAATTTGGTATGGCCTATTGGGTTTATCAGCCAAACTCCAAATTATTGGCCAACACAGCACAATTCCTTTCCCAATATTCCAGCAACAAATCCTTCTTCCATCCAAGACTATAACCTCAAGGAAGTTGAATTCTATGATAATCGTCAACTGCAGCCAGTAAATGCAAACAATAATTGTCAATATCCATGTGACATTTACTTCCCACAAGATCAATTGTATTGTCCTTCTACAATGAACAACATAAACTCTGCAGGGTTGACCTATGTGAACCAGCAACAACTAGATGGATCGATCTCGACTTCGACAGAAAGCAGTAGTTGGGGAGATATGAGTTCTTTGATTCACTCACCTTTGGCTTCTGATTATGAAGGTTGCCACCAACAAACAATGATTCAAGAAGATTTTACTTTTGAGGAGTCTATGTTCTATGGAATGATCCAAACGCAATAA 885 0.3932 MGRAPCCDKANVKKGPWSPEEDSKLKAYIQQHGTGGNWIALPKKIVGLKRCGKSCRLRWLNYLRPNLKHGSFSEEEDNIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLTKQRKEQQSQACRVFNQNQEIKRESGNLVWPIGFISQTPNYWPTQHNSFPNIPATNPSSIQDYNLKEVEFYDNRQLQPVNANNNCQYPCDIYFPQDQLYCPSTMNNINSAGLTYVNQQQLDGSISTSTESSSWGDMSSLIHSPLASDYEGCHQQTMIQEDFTFEESMFYGMIQTQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01762 294 Gene3D - 70 144 - -
Mepo1g01762 294 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Mepo1g01762 294 SMART sant 13 65 IPR001005 -
Mepo1g01762 294 SMART sant 68 116 IPR001005 -
Mepo1g01762 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 63 IPR017930 -
Mepo1g01762 294 CDD SANT 71 111 IPR001005 -
Mepo1g01762 294 PANTHER OS09G0431300 PROTEIN 1 259 - -
Mepo1g01762 294 Pfam Myb-like DNA-binding domain 14 63 IPR001005 -
Mepo1g01762 294 Pfam Myb-like DNA-binding domain 70 112 IPR001005 -
Mepo1g01762 294 FunFam Transcription factor RAX3 7 69 - -
Mepo1g01762 294 SUPERFAMILY Homeodomain-like 11 110 IPR009057 -
Mepo1g01762 294 FunFam Transcription factor RAX3 71 146 - -
Mepo1g01762 294 CDD SANT 16 63 IPR001005 -
Mepo1g01762 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Mepo1g01762 294 ProSiteProfiles Myb-like domain profile. 9 63 IPR001005 -
Mepo1g01762 294 Gene3D - 7 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01762 Mepo-Chr1 17524709 17526084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01762 1 173 MYB Transcription Factor Family AT3G49690 68.750 2.36e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo1g01762 Myb_DNA-binding 4.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01762 K09422 - gmx:100791406 332.413