Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01747 ATGATTCAAATTTCGTCTACCAACTACATGCCTGAATTTGGATTAATGGAGGACACTACTTTGTTTAATGATTATGAGTACCCTATGGATTCATCTGCATTTCAGTTTGATGATATGGCATACTTCAAGTCTTTCTCAGAATCCCCACAAGAGAGTACTTATTCCTCTCATAACAACTACAACAACAAGCGAATCCATTCCGAAAGCCCACAGAACAGTTCTTTCCCCATTGAAAGTAGTCCTGATCAATCTGTTGCCTCAGCAACACCACCAACTAAAGTACTCAAGGCTTCTCCCAAAATCATTTCATTTGATTACTCGAATAAGAAACCTAAAACCGAGATCGGGTATGGTGAAAACTTGAATTTTGGAACTGTGATTTCTCAAGGTGACTACGATAATCGAGAGAACAAGGTAGCCGCAATAAATAGAAACCCTATGCAGGCGCGAGATCATGTTATCGCGGAAAGAAAACGAAGGGAAAAGCTTAGCCAGAGGTTCATTGCTCTTTCCTCCATTCTTCCTGGACTAAAAAAGATGGACAAGGCAACTATTTTGGAAGATGCTATAAAACATATGAAGCAACTACAGGAAAGAGTGAAGACATTGGAGGAACAAGTAGCCGATAAAAAAGTCGAATCTGCAGTTTTTGTGAAGAGATCTATTATCTTCGACAATGATGATAGCTCCTCTTGCAACGAAAACTCCGACCAATCACTCCCGAAAATCGAAGCAAGAGTTTCAGGAAAGGACATACTCATTAGGATCCATTGTGACAAACATTGCGTCCGAACTGCGACAGCAATATTCAATGAATTGGAAAAACACCATCTCACTGTTCAGAGTAGTTCTGTTTTGCCATTTGGAAATAAATATCTTGACATAACCATTGTTGCTCAGATGAATAACGAATATTGCTTGACAATAAAGGATCTTGTAAGAAGCATAAGTCAGGTTTTGAGACAGCTTATTTGA 975 0.3897 MIQISSTNYMPEFGLMEDTTLFNDYEYPMDSSAFQFDDMAYFKSFSESPQESTYSSHNNYNNKRIHSESPQNSSFPIESSPDQSVASATPPTKVLKASPKIISFDYSNKKPKTEIGYGENLNFGTVISQGDYDNRENKVAAINRNPMQARDHVIAERKRREKLSQRFIALSSILPGLKKMDKATILEDAIKHMKQLQERVKTLEEQVADKKVESAVFVKRSIIFDNDDSSSCNENSDQSLPKIEARVSGKDILIRIHCDKHCVRTATAIFNELEKHHLTVQSSSVLPFGNKYLDITIVAQMNNEYCLTIKDLVRSISQVLRQLI 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01747 324 CDD bHLH_AtNAI1_like 149 221 - -
Mepo1g01747 324 PANTHER BHLH TRANSCRIPTION FACTOR 38 322 - -
Mepo1g01747 324 Gene3D - 139 212 IPR036638 GO:0046983
Mepo1g01747 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 214 IPR036638 GO:0046983
Mepo1g01747 324 Coils Coil 186 213 - -
Mepo1g01747 324 SMART finulus 153 202 IPR011598 GO:0046983
Mepo1g01747 324 Pfam Helix-loop-helix DNA-binding domain 151 197 IPR011598 GO:0046983
Mepo1g01747 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Mepo1g01747 324 MobiDBLite consensus disorder prediction 47 92 - -
Mepo1g01747 324 MobiDBLite consensus disorder prediction 47 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01747 Mepo-Chr1 17327854 17329467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01747 138 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.479 1.22e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo1g01747 HLH 7.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01747 - - tpra:123921001 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01747 1 17327854 17329467 Mepo1g01747 1 17327854 17329467 ECH
Mepo5g00595 5 5496412 5498503 Mepo1g01747 1 17327854 17329467 PCT