Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01740 ATGGATTCCCGCTCAGCACCATCACCACAACAACCAACTATGATGGTGGGTCCCACATCTTACGCTCCAACTAACACCACCATGATCAGCCCTAACTCCTCCACCACAACCACCACCACCACCGCGAACGCGAACATCATGGCACCCGCTACAGCTCGTTTTCCTTTCGCTTCTCCGCAATCGGAGCCGTTTGCTGTCACTCATGACGGTCCTTCTTCTCCGTCGACGCTTGGGAAGAAGAAACGTGGCCGGCCGAGGAAATACTCGCCTGATGGTAACATTGCTCTTGGTTTGGCTCCTGTTTCTTCTCCTGTTGCTGCTACGTCTGCTGCTTCGGCTGGTGATTCTGGAAACGCAGATGCGCCTCCCAAGAAACATAGAGGAAGGCCGCCTGGCTCTGGGAAGAAACAGTTAGATGCGCTTGGTGCTGGTGGGACTGGATTCACTCCACACGTAATCTTGGTGGAGTCTGGTGAGGACATTACAGAAAAAGTTATGGCCTTTTCTCAGACGGGGCCTCGGACAGTTTGTATTCTTTCTGCCATTGGTGCAATCAGCCGTGTAATCCTTCGACAGCCAGCATCAGGCAGTATTGCAAGATATGAGGGCCAATTTGAGATCGTATCATTATCAGGTCCTATGCCACTATCTGAAAATAATGGTGAACAAAGCAGAACAAGCAGTTTATACGTTTCTGTTGCAGGGGCTGATGGGCGAGTTTTGGGTGGTGCAGTTGCTGGCGAGCTAACTGCAGCGTCAACTGTACAGGTCATTGTGGGTAGCTTTATTGTGGACCGGAAAAAGTCAAGCGCAAGTATGGTGAAATCTGGGCCTTCTTCAGCACCAACTTCCCAAATGTTGAACTTTGGGGCACCTACGACTCCAACTAGTCCCACTTCTCAAGGGCCTTCAACCGAGTCCTCGGAGGAAAATGATCATAATAGTAATTTTAGTAGGGGACCTGGACTCTACAACAACGCTAATCAGCCTGTTCATAATAATATGCAGCAGATGTACCATCATCCACTATGGGCTGGCCAAACTCATCAGTGA 1053 0.5005 MDSRSAPSPQQPTMMVGPTSYAPTNTTMISPNSSTTTTTTTANANIMAPATARFPFASPQSEPFAVTHDGPSSPSTLGKKKRGRPRKYSPDGNIALGLAPVSSPVAATSAASAGDSGNADAPPKKHRGRPPGSGKKQLDALGAGGTGFTPHVILVESGEDITEKVMAFSQTGPRTVCILSAIGAISRVILRQPASGSIARYEGQFEIVSLSGPMPLSENNGEQSRTSSLYVSVAGADGRVLGGAVAGELTAASTVQVIVGSFIVDRKKSSASMVKSGPSSAPTSQMLNFGAPTTPTSPTSQGPSTESSEENDHNSNFSRGPGLYNNANQPVHNNMQQMYHHPLWAGQTHQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01740 350 SMART AT_hook_2 79 91 IPR017956 GO:0003677
Mepo1g01740 350 SMART AT_hook_2 124 136 IPR017956 GO:0003677
Mepo1g01740 350 Gene3D - 150 276 - -
Mepo1g01740 350 MobiDBLite consensus disorder prediction 272 330 - -
Mepo1g01740 350 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 262 IPR005175 -
Mepo1g01740 350 CDD DUF296 149 262 IPR005175 -
Mepo1g01740 350 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 40 315 IPR039605 GO:0003680
Mepo1g01740 350 MobiDBLite consensus disorder prediction 1 39 - -
Mepo1g01740 350 MobiDBLite consensus disorder prediction 51 144 - -
Mepo1g01740 350 MobiDBLite consensus disorder prediction 270 330 - -
Mepo1g01740 350 SUPERFAMILY AF0104/ALDC/Ptd012-like 147 263 - -
Mepo1g01740 350 ProSiteProfiles PPC domain profile profile. 145 284 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01740 Mepo-Chr1 17204056 17211347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01740 79 350 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 47.267 4.12e-69 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01740 - - gmx:100789717 398.667