Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01734 ATGGGTTGTACGGTGAGAGAGAAACACATCAGAGCTAATCGGCGACCACGATCAACGGCGACGACGGCGACGGCGAAACCTGATTCCGATTCATCGGAAATCAAAGATGCGATTTCGAAATCCATTGAAGAATCGGGTCTCAAACCCTTCAAATACGATCTTTCTCGTGTTGATTCTTTGAATTCTCACTGTCTGATTCCTATCCCCAATCCAAACCCTAATTCTGATGAACCTGGCTGGGGCTACTGCACTAAGGAACAATTGGAGGAGATTTTGTTGAAGAATTTGGAATTTGTTTACAATGAAGCTGTTTCCAAGATTGTTGCTTTGGGTTATGATGAAGATACGGCTTTGAAAGCGGTTTTGAGGAATGGCCATTGTTATGGTGGGATGGATGTTTTGACGAATATTTTGCATAATTCGTTGGCGTTTTTGAATAGTAATAGTGGTGCTTATGTTGGTGTTGGTGTTAATGGTGCTGTTTGTGCTGGTTTTGCTCGTGAGGGTGAGAATATGGATGAGCTTGAACCGGTTTTTGCTGATTTGAAGCATTTGGAGGAGTATTCTTTAGCTGGGATGGTGTGTTTGTTGCAACAGGTTAGGCCGAATTTGAGTAAAGGTGATGCAATGTGGTGTTTGCTAATGAGCGATCTTCATGTTGGGAAAGCTAGTACTATAGAGATTCCTGTGCCGGGGAGTGCAGGTGCGAGGGGAGCTGCTGCTGTTGAATCTGGTTCTGGTGGTGGTGGTGGTGGTAAGGCTCGTTCTAAACCGGTTGCTCATAGGTCTTTTCCACCCTGTAAGTTTCATGAGGGGTGGGGATTTGGAAATGGGGATTACCCCACGAATGCGAATGGGATATTGTCTTGTGCTCCAGTTTTGCAGAGGGAGATTGAATTCCCGAAGAGGTTTGATCTTTCTCCGCCAATGAAGTGCTTGTTGAAGAGAAATGTTGCCATGTTTGCTGCTGGTTTTAGAGCAAACACCAAGCAATTGCAGGCGAAGGGGAAGGCCAATGTTCCTGGTCGTAGTGCTGTGTCGAATTTGGATTCTCCGGTTGTATCTGGGGCTGAAACCACAGTTGATCCGTGTGGACACTCTCGGGTTGTTGATAACCAAGAGGCTGTGAACTCAGTGCTGAGTAAATTTCGTGACTTGAATCTTGATGAGAATTTGGAGTTTGTGGCTGAGGATCAGAAGGATGAGGTGATAGTGAGTATATTTCATCAGATAAAGGATTTGGAGAAACAGGCCAAGGAGCGGAAAGAATGGGCTTATCAGAAAGCATTGCAGGCCGCGAAGAAGCTAAGCAGTGATTTGACAGAGCTCAAAACATTAAGGATGGATAGAGAGGAGACCCAGAAATTGAAGAAAGGGAAACAGGCACTTGAGGACACAACCATGAAGAGACTCTCGGAGATGGAGAATGCTTTGAGAAAGGCTAGTGGTCAAGTGGACCGTGCAAATGGAGCTGTGAGAAGATTAGAGACTGAGAATGCTGAAATCAGAGCAGAGATGGAGGCCTCCAAATTAAGTGCATCAGAGTCGGTTACAGCTTGCTTAGAAGTTGCAAAAAAAGAGAAAAAATACTTGAAGAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAAAAGGAGATTTCTGATTTGAAAGAGAAGATATTAGAGGATCGAGAAGTGTCAGCTCAGAATAAGCAGCGCCAAAAAGAAGCTGAGGCTAAATGGAAGGAGGAGTTGAAGGCTCAAGAAGGTGCCTTGGTACTAGTTGATGAGGAGCGCCGTTCCAAGGAAGCAGCTGAATCAGATAATAAGAGGGGGTTTGAGGCTTTGCGTCTGAAAATAGAATTAGATTTCCAGCGCCACAAGGATGATCTAAGCAGACTTGAGAATGATCTTTCGCGCCTTAAAGCATCCGTTCGATCTGCTGCATTGCATCACCAAAATACTTCACCTATCAAAGACTTTGAGGGTACAAAGCCTCAAAGAGAGACAATTGCTAAGCTGCTTCTGGATTTGGATGATTTATCAGAAAGTGAAGCTAATAACAACAGAGAATGCATTATATGTATGAAGGATGAAGTCTCCGTTGTTTTCTTGCCGTGTGCTCACCAAGTCATGTGTGCTAAATGCAGTGATGAGTATGGGAAGAATGGTAAGGCTGCTTGTCCTTGCTGCCGAGTTCAAATCCAACAGAGAATCCGTGTATTTGGGGCATGCTCGTAG 2226 0.4456 MGCTVREKHIRANRRPRSTATTATAKPDSDSSEIKDAISKSIEESGLKPFKYDLSRVDSLNSHCLIPIPNPNPNSDEPGWGYCTKEQLEEILLKNLEFVYNEAVSKIVALGYDEDTALKAVLRNGHCYGGMDVLTNILHNSLAFLNSNSGAYVGVGVNGAVCAGFAREGENMDELEPVFADLKHLEEYSLAGMVCLLQQVRPNLSKGDAMWCLLMSDLHVGKASTIEIPVPGSAGARGAAAVESGSGGGGGGKARSKPVAHRSFPPCKFHEGWGFGNGDYPTNANGILSCAPVLQREIEFPKRFDLSPPMKCLLKRNVAMFAAGFRANTKQLQAKGKANVPGRSAVSNLDSPVVSGAETTVDPCGHSRVVDNQEAVNSVLSKFRDLNLDENLEFVAEDQKDEVIVSIFHQIKDLEKQAKERKEWAYQKALQAAKKLSSDLTELKTLRMDREETQKLKKGKQALEDTTMKRLSEMENALRKASGQVDRANGAVRRLETENAEIRAEMEASKLSASESVTACLEVAKKEKKYLKKLLAWEKQKAKLQKEISDLKEKILEDREVSAQNKQRQKEAEAKWKEELKAQEGALVLVDEERRSKEAAESDNKRGFEALRLKIELDFQRHKDDLSRLENDLSRLKASVRSAALHHQNTSPIKDFEGTKPQRETIAKLLLDLDDLSESEANNNRECIICMKDEVSVVFLPCAHQVMCAKCSDEYGKNGKAACPCCRVQIQQRIRVFGACS 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01734 741 SUPERFAMILY RING/U-box 678 733 - -
Mepo1g01734 741 Coils Coil 527 561 - -
Mepo1g01734 741 CDD RING-HC_MIP1-like 685 736 - -
Mepo1g01734 741 MobiDBLite consensus disorder prediction 1 34 - -
Mepo1g01734 741 Coils Coil 612 639 - -
Mepo1g01734 741 Coils Coil 426 446 - -
Mepo1g01734 741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 674 738 IPR013083 -
Mepo1g01734 741 ProSiteProfiles Zinc finger RING-type profile. 687 727 IPR001841 -
Mepo1g01734 741 PANTHER OS05G0141500 PROTEIN 1 736 IPR046934 -
Mepo1g01734 741 Coils Coil 471 512 - -
Mepo1g01734 741 Pfam Family of unknown function (DUF6592) 95 223 IPR046527 -
Mepo1g01734 741 Pfam Zinc finger, C3HC4 type (RING finger) 684 732 - -
Mepo1g01734 741 SMART ring_2 687 726 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01734 Mepo-Chr1 17142933 17147464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01734 682 737 C3H Transcription Factor Family AT1G73950 42.857 4.06e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01734 - - gmx:100777787 947.577