Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01707 ATGCAAACCCTAGCAGATACTTCATGCACCGATTGTTTTGTTCAATCTCATGCATCATTTTACCCAAACTCTGAAGAAAACGGCACAGATTCTGGTGCATGTGGATTTGGTTCCTTTGGTGCTACTATTAATGGTGGGGATGTATCGGCTGCATCTAGTCTTTATCGAGATGGAGTTGGCTGTGGCGCTTGTTACCAGGTGAGGTGTACCAACAGTGTTTATTGCTCAGGCAACGGTGTCACGGTAGTTTTAACTGATCAAGGCTCAGGAGATAACACCGACTTCATTCTTAGCCAACGAGCCTTCAGTGGGATGGCTCAGAGCAAGGATGCTGCCACTTCTCTATTAGCTCTTGGTGTAGTTAATATTGAATACAGACGCGTTTCATGTAGCTACCCAAACAAAAACATTACAATTAAGATTGATGAAAGCAGCAGCAATCCTCATTACTTGGCTTTTGTCTTATGGTTTCAACAAGGAAAGAGGGACATAACTGCTGTGCAGCTCTGTGAGACTCAGAACTTTGTCTGCAAGTTACTGGATCGGGATCATGGCGCAGTCTGGACTTCTACCTCTCCACCGAGTGGACCTCTGACTTTAAGGATGTTGTTTAGTACTGAAGATGGAGAAGATACATGGATTGTTCCTGTTAATAACATACCAGAAAACTGGAAGGCTGGAGACACGTATGACTCAGGAGTACAAGTAGACCAGTAG 717 0.4421 MQTLADTSCTDCFVQSHASFYPNSEENGTDSGACGFGSFGATINGGDVSAASSLYRDGVGCGACYQVRCTNSVYCSGNGVTVVLTDQGSGDNTDFILSQRAFSGMAQSKDAATSLLALGVVNIEYRRVSCSYPNKNITIKIDESSSNPHYLAFVLWFQQGKRDITAVQLCETQNFVCKLLDRDHGAVWTSTSPPSGPLTLRMLFSTEDGEDTWIVPVNNIPENWKAGDTYDSGVQVDQ 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01707 238 PANTHER EXPANSIN-B3 15 235 - -
Mepo1g01707 238 Pfam Expansin C-terminal domain 137 220 IPR007117 -
Mepo1g01707 238 Gene3D - 3 131 IPR036908 -
Mepo1g01707 238 Pfam Lytic transglycolase 51 125 IPR009009 -
Mepo1g01707 238 CDD DPBB_EXLB_N 14 130 - -
Mepo1g01707 238 SUPERFAMILY Barwin-like endoglucanases 7 134 IPR036908 -
Mepo1g01707 238 Gene3D - 132 236 IPR036749 -
Mepo1g01707 238 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 31 135 IPR007112 -
Mepo1g01707 238 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Mepo1g01707 238 PRINTS Expansin/Lol pI family signature 118 134 IPR007118 GO:0005576
Mepo1g01707 238 PRINTS Expansin/Lol pI family signature 12 27 IPR007118 GO:0005576
Mepo1g01707 238 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Mepo1g01707 238 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 149 232 IPR007117 -
Mepo1g01707 238 SUPERFAMILY PHL pollen allergen 135 232 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01707 Mepo-Chr1 16829772 16831680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01707 10 234 Expansin Gene Family AT4G17030 44.690 1.30e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01707 - - gmx:100794009 424.861