Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01668 ATGGGAAAACAAGGACCTTGCTTTCACTGTGGAGTTACAAGCACACCACTTTGGCGTAACGGGCCACCCGAGAAGCCAATTTTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCTTTACATGCTCGGACAGATCCTGTCGATTTTGAGGATCAGAGAGTTTCAAGGTTAAAGATTGTATCATTAAATAAGAACAAAGAAGTGAAATTGGTTAAACGAAAGCAGAACTATGATGATGCTTATGCTGCATCTGGATGGTTCACCCCTGAATATAATCAAGGATTACAAAAGGCTGTTGACGAGGATACAAGCAATAGATCAAGTTCAGGGTCAGCCATCTCTAATTCAGAAAGCTGCGTTCAATTTGGCGGCACCGATGCTAGTGATTTGACAGGTCCTTCTCGGTCAGTGATCTGGGATACTGCGGGGCCTTCAAAAAAGAGGACATGTGGCGGTCGTCTGAAGCATTCTTCTGTTGAAAAGCTCACACAAGACTTGTGTACTATTCTCCATGAACAACAGCAATCCTGTTTTTCTGCTTCTTCTGAAGAGGAACTTCTTTATGAAAGTGAAACTCCGATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTTATTAGGCATCCTAGCTCTATAGCTCGTGACGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAGCAATGCCTTATGAATGAGGAGTATTCCTGTTATGGTTCAATTCCCATGCTTAGTGATTACACTGGCATGAATTTCTCTTCTCAAGGAGTTGCAAAGGTCAAAAACTCTGCTGGCCAAAGACTGCAACAGGAGCAACTTATGTGGGACAAGTCTCAGCTTGAAAAACTAGAAGTTCTTGGAAACCATGTTTCATCGCTGTGCTTAATAGATTTAAATGATGTAGTGAACTATGACGAGTTTTCAAGAAATTTGACAAATGAAGAGCAGGAGCAATTACTGAAGTATCTCCCAGTGGTTGATACTGCTAAATTTCCTGATAGCCTTAAAATTATGTTTGATAGCTTTCAATTCAAGGAGGAGTTAACTTATTTTCAGAAACTTCTCGGGGAAGGTGTCTTTGATATCTCTTTCTTGGGGGCTAACCCTGAAAACTGCAAGACGTCTAAAAGGCTTGCATTGTCTAACTTGTCAAAGTCAAAATGTGTAGAACACTATAATTTTCTCAAGAAAGGTGGAAACAAAGCTGGAAAACGTAATGATATGGAATCTCCTGCCGTGGCATCAAGTAATGTTGCGAATGTTAAGAGATTGCGTGTCAGCCAAAATCAAAATTTCCCAGAATTGAAGACAACAATGAGGAGTCCCAAAAGGGTGATAGTAAAAGCTGGCACTGGCGGCAAAGAAGCTGTAGATGGCTCTAGCATCAGTCCGAAAAGCCTATTTGCATTTCCTCGCAATGGTGGCTTGCACATGCTGGATTCTTTAAACTTCGTTGATGAGAGTTCGGATCAAGATCTGCTGCTAGAGTTTCCATCTAACAATTCTTTTCCACAGGCAGAGCTCCTGCTCCCAAATTCTAGCTTGGTTGCTCAAGGAAGCACCAGTAGTAGCTCAGTATACTCGCATGTTACTCGTCCTTGA 1629 0.4193 MGKQGPCFHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTDPVDFEDQRVSRLKIVSLNKNKEVKLVKRKQNYDDAYAASGWFTPEYNQGLQKAVDEDTSNRSSSGSAISNSESCVQFGGTDASDLTGPSRSVIWDTAGPSKKRTCGGRLKHSSVEKLTQDLCTILHEQQQSCFSASSEEELLYESETPMVSVEIGHGSMLIRHPSSIARDEESEASSLSVDNKQCLMNEEYSCYGSIPMLSDYTGMNFSSQGVAKVKNSAGQRLQQEQLMWDKSQLEKLEVLGNHVSSLCLIDLNDVVNYDEFSRNLTNEEQEQLLKYLPVVDTAKFPDSLKIMFDSFQFKEELTYFQKLLGEGVFDISFLGANPENCKTSKRLALSNLSKSKCVEHYNFLKKGGNKAGKRNDMESPAVASSNVANVKRLRVSQNQNFPELKTTMRSPKRVIVKAGTGGKEAVDGSSISPKSLFAFPRNGGLHMLDSLNFVDESSDQDLLLEFPSNNSFPQAELLLPNSSLVAQGSTSSSSVYSHVTRP 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01668 542 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Mepo1g01668 542 CDD ZnF_GATA 6 55 IPR000679 GO:0006355|GO:0043565
Mepo1g01668 542 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Mepo1g01668 542 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Mepo1g01668 542 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Mepo1g01668 542 MobiDBLite consensus disorder prediction 106 127 - -
Mepo1g01668 542 Gene3D - 3 84 IPR013088 GO:0006355|GO:0008270
Mepo1g01668 542 PANTHER OSJNBB0038F03.10 PROTEIN 1 536 IPR044589 -
Mepo1g01668 542 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Mepo1g01668 542 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 298 409 IPR044867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01668 Mepo-Chr1 16461902 16467899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01668 1 518 C2C2-Gata Transcription Factor Family AT4G17570 51.224 2.97e-145 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo1g01668 GATA 3.6e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01668 - - psat:127074243 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo5g00529 5 4555298 4560034 Mepo1g01668 1 16461902 16467899 PCT