Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01640 ATGGCACCCAGAAAAGATGGACCTACTAAGAAAACAATGAATAGAGGAGCATGGACCCAAGAGGAAGATCAAAAGCTAGCACAATGCATCCAAATTCATGGTGCCAAGAAATGGAAAACCGTTGCAAACAATTCAGGTTTGAATAGGTGTGGAAAGAGTTGCAGGCTAAGATGGTTGAACTATCTTAGACCCAATATCAAGAGAGGGAACATTTCAGATGGAGAAGAGGATTTGATTATTAGGCTTCACAAACTTCTTGGAAACAGGTGGTCTTTGATAGCTGGAAGGCTTCCAGGGCGAACAGACAACGAAATTAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGCCAGTCACATAGAGGAAAAACCAGAAACTTCTACTACACAAGAAACTATAGCCCAAGACAATGTTGTTGGGGATAATGCTATGTTACAGAATGAAGATTCAATCAGTGGAAGTCTTGATTCAGATATTATATTTGGTGTGAATGAATTCTTAGACTTTTCCACTGAAGAACCATATGGGTTTGATTGGGTGAATAAATTCTTGGAAATTGATTGGTTTCAGTTTCCTGAGAACACTAACATCTGA 594 0.3855 MAPRKDGPTKKTMNRGAWTQEEDQKLAQCIQIHGAKKWKTVANNSGLNRCGKSCRLRWLNYLRPNIKRGNISDGEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKASHIEEKPETSTTQETIAQDNVVGDNAMLQNEDSISGSLDSDIIFGVNEFLDFSTEEPYGFDWVNKFLEIDWFQFPENTNI 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01640 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Mepo1g01640 197 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Mepo1g01640 197 SMART sant 67 115 IPR001005 -
Mepo1g01640 197 SMART sant 14 64 IPR001005 -
Mepo1g01640 197 FunFam Transcription factor TT2 71 140 - -
Mepo1g01640 197 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mepo1g01640 197 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Mepo1g01640 197 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Mepo1g01640 197 CDD SANT 75 113 IPR001005 -
Mepo1g01640 197 Gene3D - 71 139 - -
Mepo1g01640 197 Gene3D - 8 68 - -
Mepo1g01640 197 FunFam MYB-related transcription factor 14 67 - -
Mepo1g01640 197 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Mepo1g01640 197 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Mepo1g01640 197 CDD SANT 17 62 IPR001005 -
Mepo1g01640 197 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 9 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01640 Mepo-Chr1 16107239 16108826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01640 10 187 MYB Transcription Factor Family AT1G35515 44.845 1.20e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo1g01640 Myb_DNA-binding 6.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01640 K09422 - gmx:100799575 273.092