Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01629 ATGGAAAGACACAAATGCAAGCTTTGTTCAAGAACGTTTGGTAATGGAAGAGCACTTGGTGGACACATGAAGGCTCATCTTGCTATTGCTAAGTCTCAACAGAAACAATTCACTCAACCTGATTCTTTCTCATCGTCGGAATCGGAAGAAGATGAAGGAGAAGAAAAAGCTTTGATTAATTATGTTTTGAGAGAGAATCCTAAGAAAAGTCTCAAAGTTGCAGATCCTGAATTTTCTTTTGTACGTGAAACTGAGTCTGTTATTGTTCAAGATAGAGAAAGTGAGACTGAGTCAAAGAACAACCCGACTCGTCAACAACGATCCAAACGCAACAGAAAACACAACAACAACCAGGATTTTCTACAACAGAAGAAACCAAAGCCGAGTTTCATGGTGCCAACAACTCCGTCACAATTCACTGAACAAGAACCTGTGAGTTCAGTTTCTGATACTTCCCCTGAAGAAGATGTTGCTATGTGTCTCATGATGCTTTCCAGAGACAAATGGAGTCGAAAGATGAACAACATCAACAATGTGGAACAAGAAGAAGAAGAAGAAGAGGGATCGGTGGAGAAAATATCGAAGGTGAAGTTATTGAAACGAGTTCGTGGGAAGCATTTATGCGAAAATTGTGGGAAAACGTTTCGATCTTCTAGAGCATTGGGAAGTCATAAAAGTATTTGTTGTCGCGATGAAGCAAAGAATGGTAATGGTAACGGTAACGATGATAAGATTTTTGAATGTCCATTTTGTTTTAAGGTGTTTGGTTCTGGTCAAGCACTTGGTGGTCACAAGAGATCTCATCTCATGATCCCTTCTTCATCTACTTCCACTGCTAATGTTATTGTTAATGTTAATCCTTCTGCTGCTAGATTCAAAGAGAGTTTCATAGATCTCAATATGCCAGCTCCACTTGAAGAAGATGATGATCTTAGTGTTGTTTCTGATGCCTAA 954 0.392 MERHKCKLCSRTFGNGRALGGHMKAHLAIAKSQQKQFTQPDSFSSSESEEDEGEEKALINYVLRENPKKSLKVADPEFSFVRETESVIVQDRESETESKNNPTRQQRSKRNRKHNNNQDFLQQKKPKPSFMVPTTPSQFTEQEPVSSVSDTSPEEDVAMCLMMLSRDKWSRKMNNINNVEQEEEEEEGSVEKISKVKLLKRVRGKHLCENCGKTFRSSRALGSHKSICCRDEAKNGNGNGNDDKIFECPFCFKVFGSGQALGGHKRSHLMIPSSSTSTANVIVNVNPSAARFKESFIDLNMPAPLEEDDDLSVVSDA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01629 317 Coils Coil 166 186 - -
Mepo1g01629 317 SUPERFAMILY beta-beta-alpha zinc fingers 206 268 IPR036236 -
Mepo1g01629 317 SMART c2h2final6 4 26 IPR013087 -
Mepo1g01629 317 SMART c2h2final6 246 268 IPR013087 -
Mepo1g01629 317 SMART c2h2final6 206 226 IPR013087 -
Mepo1g01629 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 206 233 IPR013087 -
Mepo1g01629 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 246 268 IPR013087 -
Mepo1g01629 317 MobiDBLite consensus disorder prediction 89 153 - -
Mepo1g01629 317 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Mepo1g01629 317 Gene3D Classic Zinc Finger 203 268 - -
Mepo1g01629 317 MobiDBLite consensus disorder prediction 89 104 - -
Mepo1g01629 317 MobiDBLite consensus disorder prediction 32 56 - -
Mepo1g01629 317 Pfam C2H2-type zinc finger 3 28 - -
Mepo1g01629 317 Pfam C2H2-type zinc finger 206 225 - -
Mepo1g01629 317 Pfam C2H2-type zinc finger 246 268 - -
Mepo1g01629 317 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 317 IPR044303 GO:0006355
Mepo1g01629 317 ProSitePatterns Zinc finger C2H2 type domain signature. 248 268 IPR013087 -
Mepo1g01629 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Mepo1g01629 317 MobiDBLite consensus disorder prediction 121 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01629 Mepo-Chr1 16021648 16022929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01629 1 314 C2H2 Transcription Factor Family AT3G60580 37.764 4.02e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo1g01629 zf-C2H2_6 2.6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01629 - - tpra:123884584 454.136