Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01589 ATGTCGTCCTCTTCAACCACAACATTATCCTTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTCCACTGCACCATCTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACCGTTACTGTGAGATGCGGTCATTGCACTAATCTGCTCCCAGTCAACATGCGTGCATTACTTCTTCCATCCCCAAATCAGTTTCATTTGGGACACTCTTTCTTCTCCCCAACTCATCATAACCTTCTGCAGGAGGAGATGCCAAACCCAGCTCCAAATTTTATGATGAACCACATAAATGCACCAAATGATTTCTCTATGCCTCCCGCTAGGACTGTAGCTGATGAGCTTCCACGCCCACCAATCATAAACAGACCTCCAGAGAAAAGACAGAGAGTTCCCTCAGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATTAAGTCTGTCAATCCTGATATTACCCACAGGGAAGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATTCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGAAGGTGATGATCAGATTCTGATGAAAGATGAGGGATTTTATGCTTCAGCAAATCTTGGTGTTTCGCCCTACTAA 660 0.4652 MSSSSTTTLSLDHLPPSEQLCYVHCTICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPTHHNLLQEEMPNPAPNFMMNHINAPNDFSMPPARTVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQEGDDQILMKDEGFYASANLGVSPY 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01589 219 CDD HMG-box_SF 135 171 - -
Mepo1g01589 219 PANTHER PROTEIN YABBY 6-RELATED 1 191 IPR006780 GO:0007275
Mepo1g01589 219 Gene3D High mobility group box domain 126 189 IPR036910 -
Mepo1g01589 219 FunFam Axial regulator YABBY 126 197 - -
Mepo1g01589 219 SUPERFAMILY HMG-box 125 174 IPR036910 -
Mepo1g01589 219 Pfam YABBY protein 16 181 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01589 Mepo-Chr1 15638850 15641963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01589 27 217 C2C2-YABBY Transcription Factor Family AT4G00180 61.137 3.52e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Mepo1g01589 YABBY 1.1e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01589 K25796 - gmx:100798441 377.096