Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01588 ATGAATACATTTTCACATGTACCTCCAGGCTTTCGTTTTCATCCAACTGATGAAGAACTTGTTGATTACTACCTCAGGAAGAAGGTATCATCTAAAAAGATTGATCTAGATGTCATCAAAGACGTCGATCTCTATAAAATTGAACCATGGGATCTTCAAGAATTATGCAAAATAGGAAGTGATGAACAAAATGATTGGTATTTCTTTAGTCATAAAGATAAGAAGTATCCAACAGGAACTCGAACAAATAGAGCAACAAAAGCAGGATTCTGGAAAGCCACAGGAAGAGATAAGGCAATATACTCGAAACAATTTCTGGTTGGGATGAGAAAGACTCTAGTGTTTTACAAAGGACGTGCCCCAAATGGACAGAAATCTGATTGGATCATGCATGAGTACCGTCTTGAAACTAATCAAAATGGAATTTCTCAGGAAGAAGGATGGGTTGTATGCAGGGTATTCAAGAAGAGAATGACAACAGTGCAAAAAATGAATGAATATGATCAATCACCATGTAATTGGTATGAAGATCAAGTTTCCTTCATGCCAGATCTTGAATCCCCGACCCGAACCAATTCTCATCCTCCTAACTATACTTCATACCACTCATGCAAACCAGAACTAGAATTAATGCAATATAACACACCCCACCAATACCATGATGCTAATTTTCTCCAACTTCCACACCTTGAAAGTCCAAAAATTACTCAATCTATTATTCCTTATAATCATCATGCTCATGCAAACAATAACAATATTGCACTTACTCAACAGCAACAACAGATGCAATATTTGCAGTATCATCAACAAAATCTTCACTCACTTTATGGTGGTAACAGCAGTAATGGCAATGATGAACAAGTTACTGATTGGAGAGTGCTTGACAAGTTTGTTGCTTCTCAGCTAAGTCATGAAGAAAATAATAATAATAATAATAATAATAATAATAATCAAGATCATGTTTCTAATAAAGAAGCTAGTTCTTTCTCCAATGCTGCTATTCTTCATGTGGCTGAACAAATTACTCTTCTTGATAATGGATCCAAAAAGAATGAAGTTTCTGAGGAACATGCTTCAACTTCTACCTCCAGTTGCCACATGGAACTCTGGAAGTGA 1116 0.3593 MNTFSHVPPGFRFHPTDEELVDYYLRKKVSSKKIDLDVIKDVDLYKIEPWDLQELCKIGSDEQNDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKQFLVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETNQNGISQEEGWVVCRVFKKRMTTVQKMNEYDQSPCNWYEDQVSFMPDLESPTRTNSHPPNYTSYHSCKPELELMQYNTPHQYHDANFLQLPHLESPKITQSIIPYNHHAHANNNNIALTQQQQQMQYLQYHQQNLHSLYGGNSSNGNDEQVTDWRVLDKFVASQLSHEENNNNNNNNNNNQDHVSNKEASSFSNAAILHVAEQITLLDNGSKKNEVSEEHASTSTSSCHMELWK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01588 371 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Mepo1g01588 371 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Mepo1g01588 371 FunFam NAC domain-containing protein 16 160 - -
Mepo1g01588 371 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 306 - -
Mepo1g01588 371 MobiDBLite consensus disorder prediction 357 371 - -
Mepo1g01588 371 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Mepo1g01588 371 MobiDBLite consensus disorder prediction 348 371 - -
Mepo1g01588 371 MobiDBLite consensus disorder prediction 304 323 - -
Mepo1g01588 371 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01588 Mepo-Chr1 15613461 15619072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01588 1 371 NAC Transcription Factor Family AT1G12260 54.570 5.93e-137 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mepo1g01588 NAM 1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01588 - - gmx:100783529 498.819