Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01553 ATGACCCCACAAGAAGGTAGCCCAAGCTACCAGCAACCGAGAAGAACACAAAGCCAGCCTCTGGGGAAAGAAGTCTTTCATTCTTTATACGAGTACCAACCAACCAGGCCCCTCCGGGAAAATACGAGGAAGCCGACAACATTTTGCGATGTTTCGTTTCGTAATAGGTGTGCTGTGGACACACAATATGGAGAATATAAAATCGCACTTCCATTGGACGATGATGATCAACAAGTCAATATAGAAGATGCATTAGTATTTATCAATCAAGTAAAGGTTGTCTTTAAAGATAAGATGGAAAAGTTCTATGAGTTTGTACAAGTCTTAAACGATTACAAGTCTCAAAGAGTTGACAGTAGAGGTATCCTTGCAAGAGTGAAAAAGCTGTTTAAAGGGCATTCAGATCTAGTTTTTCGATTCAATAACTTCGTGCCTGAGGAATATCAAATAACACTTCCATTGGATGACGATGAAAAAGGTCATCAATTAGCAATAAAAGATACATTTCTCAACCAAGTAAAAGTTGTTTTTCAAGATAAGATGGAAATATATTTTGAGTTTTTAGAAGCCGTGAAGGATCACAATGCTCAAGGAATTGATAGAAGAGGTGTCTCTGCAATAGTGAAAGAGTTGTTTAAAGGGCATACGCATTTAATTTTGGGATTCAATACCTACTTTCCCAAAGAATATCAAATCACACCTTCATTTCAGATTGATAGTCATGAAACTGGGGATAAAGTGAAGAAGGTGGCAGAGATCGATAAACTTCCTTGGGATGTGCTTGATATCATTTCCAAAATTCTAGATTTTGATGACCTCTTCCAATTTACTGGTGTGTGCAAGAATTGGAGGGCATTTCATAAAATTTATTGGAAAAATTTCATAACATTCCAAGAACCATTACTTGTTAAAAAGTCCTCCCATGTTATGAAATCTTTTTCCTTCATCAACATAGCTAACCAAAAAGTTTATCACTCAAAGATGATCAATTATTTTTGGCACTATGCCTATTCTGGGTCTTCGAGTGGATATCTAATAATGACAGGAAACAATAATTCATTTCTGCTAATGAATCCATTTACAAGAAGAAAGAAGGTAATCAATACCTCAACATTTAAAGTTAATTTTTCTTATTTTGCTTACCACGTCTTACTGGCTTTTGGCAAAGGCTCTGAAGAATTTGTCTTACTGGCTTTATGTAAAAGGTCAAACAGTTTGCATGTCTATCAATCTCGAAATTTTGGTTGGGTTACTTATTCGAGATTGGGATATCCATGGATGATTGTTGACTTTGTTGTTTTACATAATACTATATATGTTGTCACCGATAATGCAAACATAGGAGTACTCAACCTGAATTCTGCAAATATAAAATTTCTAGAACTGAAGAATACTCCTAGTGTAGCTTCTTCATCACACTTAAGGTTGGTTGTTTGTGATGGACAACTTTTAGTGGTTCATACTATGTCCAAGGTGGTATTTATTGTGTATAAGATAGACTTCTCAACTATGAATTACGTTAAATTGAAAACTTTGGGTGATACTGCATTATTTTATGCTCCTGGAGGAAGCTACCATGCATTGAGCAATCCGAACATGTGGGGTTATGAAAGAAACTCTCTGCATGTCATCAATCATTCAGCTACAAAATGCAAAGTGTATTTAGGGGATGATGCCAAGCTGCCAAAATACATCGAGGATAATACACTTCGAGCTCCTTTTATCGGAAGGCCCTACTTGTTGGACTGGTGTTTTAGACATCTACACTACGAGGTAGATTATTCTATAGTTGAGTAA 1797 0.3612 MTPQEGSPSYQQPRRTQSQPLGKEVFHSLYEYQPTRPLRENTRKPTTFCDVSFRNRCAVDTQYGEYKIALPLDDDDQQVNIEDALVFINQVKVVFKDKMEKFYEFVQVLNDYKSQRVDSRGILARVKKLFKGHSDLVFRFNNFVPEEYQITLPLDDDEKGHQLAIKDTFLNQVKVVFQDKMEIYFEFLEAVKDHNAQGIDRRGVSAIVKELFKGHTHLILGFNTYFPKEYQITPSFQIDSHETGDKVKKVAEIDKLPWDVLDIISKILDFDDLFQFTGVCKNWRAFHKIYWKNFITFQEPLLVKKSSHVMKSFSFINIANQKVYHSKMINYFWHYAYSGSSSGYLIMTGNNNSFLLMNPFTRRKKVINTSTFKVNFSYFAYHVLLAFGKGSEEFVLLALCKRSNSLHVYQSRNFGWVTYSRLGYPWMIVDFVVLHNTIYVVTDNANIGVLNLNSANIKFLELKNTPSVASSSHLRLVVCDGQLLVVHTMSKVVFIVYKIDFSTMNYVKLKTLGDTALFYAPGGSYHALSNPNMWGYERNSLHVINHSATKCKVYLGDDAKLPKYIEDNTLRAPFIGRPYLLDWCFRHLHYEVDYSIVE 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01553 598 ProSiteProfiles PAH domain profile. 77 147 IPR003822 GO:0006355
Mepo1g01553 598 SUPERFAMILY F-box domain 250 295 IPR036047 GO:0005515
Mepo1g01553 598 Pfam F-box domain 253 285 IPR001810 GO:0005515
Mepo1g01553 598 FunFam Paired amphipathic helix protein Sin3 83 145 - -
Mepo1g01553 598 Pfam Paired amphipathic helix repeat 100 144 IPR003822 GO:0006355
Mepo1g01553 598 Pfam Paired amphipathic helix repeat 182 226 IPR003822 GO:0006355
Mepo1g01553 598 SUPERFAMILY Galactose oxidase, central domain 331 540 IPR011043 -
Mepo1g01553 598 MobiDBLite consensus disorder prediction 1 21 - -
Mepo1g01553 598 SUPERFAMILY PAH2 domain 168 228 IPR036600 GO:0006355
Mepo1g01553 598 CDD F-box_SF 254 286 - -
Mepo1g01553 598 ProSiteProfiles F-box domain profile. 250 294 IPR001810 GO:0005515
Mepo1g01553 598 SUPERFAMILY PAH2 domain 76 146 IPR036600 GO:0006355
Mepo1g01553 598 PANTHER OS06G0113600 PROTEIN 241 561 - -
Mepo1g01553 598 ProSiteProfiles PAH domain profile. 152 229 IPR003822 GO:0006355
Mepo1g01553 598 FunFam Paired amphipathic helix protein Sin3 167 227 - -
Mepo1g01553 598 Gene3D Paired amphipathic helix 83 145 IPR036600 GO:0006355
Mepo1g01553 598 Gene3D Paired amphipathic helix 167 227 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01553 Mepo-Chr1 15299262 15306308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01553 153 233 WRKY Transcription Factor Family AT4G12020 47.059 1.83e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mepo1g01553 PAH 3.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01553 - - cam:101488742 734.947