Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01538 ATGGGAAGACAACCTTGTTGTGACAAACTTGGTGTGAAGAAAGGTCCATGGACAGCTGAGGAAGACAAGAAACTCATCACTTTTATTCTTACCAATGGACAATGTTGTTGGCGGGCTGTGCCTAAACTTGCTGGCCTTCGGCGTTGCGGCAAGAGTTGCCGTCTTCGTTGGACTAATTATCTTCGTCCTGATTTGAAGAGAGGTCTCCTCACTGAAGCAGAGGAGCAGCTTGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCGAAGATTGCTTCACGGTTACCCGGGAGAACAGACAATGAGATTAAAAATCATTGGAACACACACATCAAGAAAAAGCTCATTAAGATGGGAATTGATCCCATTACTCATGAACCTTTGAATAAACAAGCATCATCCAATGATAGTAGTACTTCATCCCCTGCAGAGAATTTGTCACAGCCTGTCAACAACCATCATGAAGTGAAGGAAACTGATGGGGTTGTCAACTCAGAGGAGAATTCAAGCTCATCCCCTGCTGAAAATTCTTCTGGAGAAGAATCCCTTTTGCTAGATAGCATTTGCAGTGATGATTCTCTAATGAATAGTATATGGTTGGATGAAACACCATTGGTGGAAGCACTTTGGGAAATGGACACTACACCTATAGTAGAAAATACAAAAAATGACATGAGTTTTATGCCTTCTTGGGAGGATAATTGTGCTTGGCTATTTGATTGTCAGGACTTTGGTATTCATGACTTTGGATTTAATTGTTTCAATGAGATAGAGTCAAGTACACTGCAAACTATAGGGATGAAGGAAAATAAACATTAG 822 0.4148 MGRQPCCDKLGVKKGPWTAEEDKKLITFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIASRLPGRTDNEIKNHWNTHIKKKLIKMGIDPITHEPLNKQASSNDSSTSSPAENLSQPVNNHHEVKETDGVVNSEENSSSSPAENSSGEESLLLDSICSDDSLMNSIWLDETPLVEALWEMDTTPIVENTKNDMSFMPSWEDNCAWLFDCQDFGIHDFGFNCFNEIESSTLQTIGMKENKH 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01538 273 Gene3D - 71 155 - -
Mepo1g01538 273 FunFam MYB transcription factor 70 146 - -
Mepo1g01538 273 CDD SANT 16 61 IPR001005 -
Mepo1g01538 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mepo1g01538 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mepo1g01538 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mepo1g01538 273 MobiDBLite consensus disorder prediction 128 151 - -
Mepo1g01538 273 FunFam MYB transcription factor 11 67 - -
Mepo1g01538 273 SMART sant 66 114 IPR001005 -
Mepo1g01538 273 SMART sant 13 63 IPR001005 -
Mepo1g01538 273 MobiDBLite consensus disorder prediction 164 182 - -
Mepo1g01538 273 MobiDBLite consensus disorder prediction 126 182 - -
Mepo1g01538 273 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mepo1g01538 273 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 180 - -
Mepo1g01538 273 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Mepo1g01538 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mepo1g01538 273 CDD SANT 71 112 IPR001005 -
Mepo1g01538 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mepo1g01538 273 Gene3D - 12 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01538 Mepo-Chr1 15138222 15139944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01538 1 252 MYB Transcription Factor Family AT4G22680 61.423 1.68e-103 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo1g01538 Myb_DNA-binding 6.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01538 K09422 - gmx:100786965 456.447