Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01528 ATGGTGAGAGGAAAAACTCAAATGAAACGCATCGAAAATGAGTCAAACAGACAAGTAACTTTCTCCAAGAGAAGAAATGGACTGCTTAAAAAGGCCTTTGAACTTTCAGTGCTTTGTGATGCTGAGGTAGCACTCATCGTCTTCTCTACCACAGGGAAACTCTATGAGTTTTCCAGTTCAAGTATAAGCAAGACAGTGGAACGCTATCAAGGGAAAGTCAAGGAACTGGTGGCTCTCAGCACCAAAGGAATCCAAGAAAATAGACAGCATCTAAAGGAATGTGATATCGACACAACAAAGAAGTTGGAACACCTAGAACTTTCCAAAAGGAAGCTGTTGGGAGATGAATTGGGTTCGTGTGCTATTGACGAATTACAACAGATAGAAAATCAACTCGAACGTGGCTTAAGCAAAATAAGGGCAAGAAAGAATCAATTGTTCAAGGAGCAAATCGAAAAGCTAAAAGAAAAGGAAAGGTTCCTTCTTGAAGAAAATAAACGTTTATGCAAGCAGTGTGGAATTGGACAAAATGATTGTTTAAATAAACAACAAGATATGGAACTCATAACAGAAAGTGTGCATGACGAGGAGGTGGAGACAGAATTGTTCATAGGGCGACCTAAGAAAAGAATGAATTGA 639 0.3912 MVRGKTQMKRIENESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTTGKLYEFSSSSISKTVERYQGKVKELVALSTKGIQENRQHLKECDIDTTKKLEHLELSKRKLLGDELGSCAIDELQQIENQLERGLSKIRARKNQLFKEQIEKLKEKERFLLEENKRLCKQCGIGQNDCLNKQQDMELITESVHDEEVETELFIGRPKKRMN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01528 212 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Mepo1g01528 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo1g01528 212 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Mepo1g01528 212 Pfam K-box region 89 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo1g01528 212 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Mepo1g01528 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo1g01528 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo1g01528 212 Coils Coil 122 171 - -
Mepo1g01528 212 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Mepo1g01528 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo1g01528 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo1g01528 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo1g01528 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo1g01528 212 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo1g01528 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01528 Mepo-Chr1 15046565 15055095 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01528 1 210 MADS-box Gene Family AT4G22950 57.547 3.01e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo1g01528 K-box 1.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01528 - - psat:127074094 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01528 1 15046565 15055095 Mepo1g01528 1 15046565 15055095 ECH