Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01461 ATGGATGGTAGGAGGCATTCTGTTGATGTCCCTATTTCTAAAACTCTTGTGGCACTTAGAAGAGTTAGGTCATTGAGGGACCCTTCAACAAATGGTATTAGCAAACTTTCTCCTTTGATTGATAATGATCATTGGGAAAATGGGATTTCTTTGAGGTTTGTTAATGCTACTTATGCATGTGAATCTGATGATAATGGTTGTTTAAGGTCAAAGGATTTAGATTTTAAGGGTCATAGAGAGCATGATAGTACCAATAACTTTGAAATGGGTTGTCACATGATGAACTATTGTGATAAACAGCAACAAGATGATGAATTAGTTTACTCTAATCCTAAGCAGCAAGGTGATTTTGGAAATAAATCGCCAAAAGAAAGTTGCTGTAGCAACCATGAAGCCATAGGATTGGATTTGGCTTCAATCATTCCGCCTAGTAATCGTTTGAAGGATAAAGAATCATGTTATTTATCTAGTGCATTGCCGTCACAATCAGGGAGAATAGATTACACAAAGTCAACTAGAAAATTGCTGCAAAAGAATCAAGCGAAACCGTTTGAATTGATAAGTGATAATGCAAACAGTGTTGAGAGTCCATGCTTTAGTGCCTCAACACACACACCTCGAGATGTTGATGTTTTAGTTGATTACAATGGATGTGGAATAAGCTGTTGTTGGTCGAAGTCACCGAGGTTTAGAGACTCAAATTATTATTCTGAAATGGAAGACCTTCCCTTGATGTTGCATGATAATGAGACTGATCTTCATGGACATAAAAGCATGAGACACATTATTGGTAGTGAAATTAGTCCAACATTAGAAACTCCTAGAAGTTTATCTATGAAATTTAGGCCGAAATCTTTCAATGATTTGGTTGGACAAAATATGGTTGGTAAGTCTCTTTTGGGTGCAATCTCTAGAGGAAGGATATCATCATTTTATCTATTTCATGGTCCTCGTGGAACGGGAAAAACATCTGCATCGAGGATATTTGCTGCTGCACTGAATTGCATCTCGCTCGAGGAGCGAAGGCCTTGTGGTTTGTGTAGTGAATGTGTTTTGTTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTCGATTCTTTGAGAATAAATCGTCCGGACAAGGCTAAATCCCTTGTTAAGAATGCTTGCACAACAGCTCCCTTTTCATCACGTTATAAGGTGTTCATTATCGATGAGTGCCAGTTATTGAATAAGGAAACATGGGCTACTCTTCTGAATAGCCTAGGGAGTTTTTCTCAACATGTGGTCTTTGTGATGATCACTCCTGATTTGGAGAAGCTACCAAGAAGTGCGGTTTCTCGAGCTCAAAGGTATCACTTTACAAAGATTAAAGATGCTGACATTGCTAGCAGACTCAAAAGAATTTGCGTTGAAGAAGGTCTTGAGTCCGAACAAGATGCTTTGGATTTCATTGCTGCTAAATCATGTGGTTCTCTTAGGGACGCAGAAATGATGCTTGATCAGCTAAGTTTGCTTGGTAAAAAAATCACAATTTCCTTAGTCTATGAGCTTACTGGGGTCATTTCTGATGATGAATTGCTTGATTTGCTGGACCTGTCTTTGTCATCCGACACTTCAAACACGGTTATAAGAGCCCGGGAGCTGTTGAGATCAAGGATAGATCCTTTACAACTTATATCTCAGCTAGCGAATCTTATTATGGACATTCTTGCAGGGAAATGTGAACTTACTGGTTCTGAAATCAGAAGAAGATTTTCTGATAGACATATTTTAGCGGAATCAAGCATGCAGAAACTTAGTCATGCATTAAAAATACTTTCTGAAACGGAGAAGCAATTGAGAATTTCTAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTACAGTTAAGCTCTATAGAATATTCATCTGTGGATGCTAATGATTCCAAGTTGTGCATCAGAGCTGCATCCAATAGAGATGGCGATTTATGCAGTACATCATCTACAACTGAAAGCTTAAAGCATCTTGCTACAGGTAAGTGCGCTGAGAAGTCATATAAAATAGAAGTGCAGGATGATGATAAAGCTACATTGGATTGTATATGGTATAAAGCTACAGAGATATGTGAATCTAAAAGGCTCAAGGCTTTTCTCAGGAAGCAAGGGAAGTTGGCTTCAGTTTGTATTAATCAAGGTCTTGCAGTTGTGGAGGTGGAATTCCACCACCGTGTCTATGTAGCTAGAGCTGAGAAGTCATGGAAACAAATTGCAAGTTCCCTACAGTTCATATTGGGTTGCAACATTGAGCTCAGAATCAACCATGTACCTTGTACTACAGATTCTAGGTATGCTAGGTTGAAGAGGTCATCTTTCAATTTCTTCAATTGTTCGCGCAGGATTCTTCGGAAATCATTATCATCTGATGAACAAGGATGTGAATCAGACTACGCTGATTGCACCTCTCAAAAGCCTATGATGATTGACCGAACTCTTTCTCGCTCCTCTGATTGCGGATCCCGGGTGCCTCCCCTTGAGTCCTACCATGGAATGGAGCTTGTAACTACTCTTAGAAGCTGTGAAGGGAATTTACTAAGCTCGGGGAAAATAATTTTAAATAGAATAGATCAAGAGACTCCAAGGATTTCATTTTCTAGAGATGATTCTGTCAAGGAAGAAGGGTGCAATTATGAAGATCTTGCATCATCAACCGTTGATTTAGAAAATACTCATTCTAACTGTTTTCCTCAAACGCTCTGGCTTCATAAAAAACTATCTTCTTCATATGCATCGAAACAGAAGGAATTTTGTTTTATCCATCCCCAAGTTCAAATGTATTGA 2802 0.3872 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISKLSPLIDNDHWENGISLRFVNATYACESDDNGCLRSKDLDFKGHREHDSTNNFEMGCHMMNYCDKQQQDDELVYSNPKQQGDFGNKSPKESCCSNHEAIGLDLASIIPPSNRLKDKESCYLSSALPSQSGRIDYTKSTRKLLQKNQAKPFELISDNANSVESPCFSASTHTPRDVDVLVDYNGCGISCCWSKSPRFRDSNYYSEMEDLPLMLHDNETDLHGHKSMRHIIGSEISPTLETPRSLSMKFRPKSFNDLVGQNMVGKSLLGAISRGRISSFYLFHGPRGTGKTSASRIFAAALNCISLEERRPCGLCSECVLFFSGRSKDVKEVDSLRINRPDKAKSLVKNACTTAPFSSRYKVFIIDECQLLNKETWATLLNSLGSFSQHVVFVMITPDLEKLPRSAVSRAQRYHFTKIKDADIASRLKRICVEEGLESEQDALDFIAAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTGVISDDELLDLLDLSLSSDTSNTVIRARELLRSRIDPLQLISQLANLIMDILAGKCELTGSEIRRRFSDRHILAESSMQKLSHALKILSETEKQLRISKNQTTWFTAALLQLSSIEYSSVDANDSKLCIRAASNRDGDLCSTSSTTESLKHLATGKCAEKSYKIEVQDDDKATLDCIWYKATEICESKRLKAFLRKQGKLASVCINQGLAVVEVEFHHRVYVARAEKSWKQIASSLQFILGCNIELRINHVPCTTDSRYARLKRSSFNFFNCSRRILRKSLSSDEQGCESDYADCTSQKPMMIDRTLSRSSDCGSRVPPLESYHGMELVTTLRSCEGNLLSSGKIILNRIDQETPRISFSRDDSVKEEGCNYEDLASSTVDLENTHSNCFPQTLWLHKKLSSSYASKQKEFCFIHPQVQMY 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01461 933 CDD HLD_clamp_pol_III_gamma_tau 450 513 IPR045085 -
Mepo1g01461 933 Pfam DNA polymerase III, delta subunit 292 450 - -
Mepo1g01461 933 SUPERFAMILY post-AAA+ oligomerization domain-like 520 622 IPR008921 GO:0003677|GO:0006260
Mepo1g01461 933 FunFam DNA polymerase III subunit gamma/tau 451 513 - -
Mepo1g01461 933 Gene3D - 451 512 - -
Mepo1g01461 933 NCBIfam DNA polymerase III subunit gamma/tau 276 624 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Mepo1g01461 933 Gene3D - 513 628 - -
Mepo1g01461 933 SMART AAA_5 308 469 IPR003593 GO:0016887
Mepo1g01461 933 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 277 689 - -
Mepo1g01461 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 509 IPR027417 -
Mepo1g01461 933 CDD AAA 290 441 - -
Mepo1g01461 933 Gene3D - 270 448 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01461 Mepo-Chr1 14445035 14449052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01461 267 562 Core DNA Replication Machinery Family AT1G21690 21.812 1.39e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01461 - - gmx:100819111 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01461 1 14445035 14449052 Mepo1g01461 1 14445035 14449052 ECH
Mepo1g01461 1 14445035 14449052 Mepo3g05771 3 71892466 71896038 PCT