Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01460 ATGACAACCACCACTTCTTCACTTTTCTTCCTTTTCTCTCTCCTCACCTTTTCTCTCATTTCCTCTTCACCCCTTCAAGACCCTGATTTGGTTACACAAGAAGTTAACAGGAAAATCAATGGCTCATTAGCTAGGAGAAATTTGGGGTACCTCTCATGTGGAAGTGGAAACCCAATTGATGATTGTTGGAGATGTGACCCTAACTGGGAAAAAAACAGACAAAGACTAGCAGATTGTGCAATTGGGTTCGGTAAGAATGCCATTGGTGGTAAAAATGGTAAAATCTACGTCGTAACAGATTCCGGTGACGACGATCCAGTGACACCAAAACCCGGTACACTTCGTTTTGCTGTGATTCAAGACGAACCATTATGGATAATCTTTGCAAGAGACATGGTGATTCAGCTAAAAGAAGAGCTTATAATGAATTCATTCAAGACAATTGATGGAAGAGGAGCTAGTGTTCACATTGCTGGTGGTCCTTGTATTACAATTCAGTATGTGACCAATGTTATAATACATGGTATACATATACATGATTGTAAACAAGGTGGGAATGCTATGGTGAGGGACTCCCCAGGACATTATGGGTGGAGAACAGTATCAGACGGTGATGGTGTTTCAATCTTTGGTGGAAGTCATGTTTGGGTGGATCATTGTTCTTTGTCTAACTGTAATGATGGTTTGATTGATGCTATTCATGGCTCCACTGCAATTACCATCTCTAACAATTATATGACTCACCATGATAAAGTTATGCTTTTGGGTCATAGTGATACTTATACTCAAGACAAGAACATGCAAGTTACTATTGCTTTTAATCACTTTGGTGAAGGCCTTGTTCAAAGAATGCCAAGGTGTAGGCATGGTTATTTTCATGTGGTAAACAATGACTATACTCACTGGGAAATGTATGCTATTGGGGGAAGTGCTAATCCTACCATCAATAGCCAAGGAAACAGATTTGTAGCCCCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGACGCACCAGAAGGTGAATGGAAAGGATGGAATTGGAGATCAGAAGGGGATTTATTGGTAAATGGTGCATTTTTCACAGCATCTGGAGCAGGAGGAGCATCATCAAGCTATGCAAGAGCATCAAGTTTAAGTGCAAGACCATCTTCTCTAGTTGGTACAATAACAACTGGTGCTGGTGTACTTGGTTGTAAGAAAGGTTCTCGTTGCTGA 1221 0.4095 MTTTTSSLFFLFSLLTFSLISSSPLQDPDLVTQEVNRKINGSLARRNLGYLSCGSGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGDDDPVTPKPGTLRFAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPGHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPEGEWKGWNWRSEGDLLVNGAFFTASGAGGASSSYARASSLSARPSSLVGTITTGAGVLGCKKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01460 406 PANTHER PECTATE LYASE 18-RELATED 25 404 IPR045032 GO:0030570
Mepo1g01460 406 Gene3D - 56 399 IPR012334 -
Mepo1g01460 406 Pfam Pectate lyase 140 322 IPR002022 -
Mepo1g01460 406 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Mepo1g01460 406 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Mepo1g01460 406 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Mepo1g01460 406 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Mepo1g01460 406 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Mepo1g01460 406 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Mepo1g01460 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Mepo1g01460 406 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Mepo1g01460 406 SMART amb_all 131 328 IPR002022 -
Mepo1g01460 406 SUPERFAMILY Pectin lyase-like 34 400 IPR011050 -
Mepo1g01460 406 FunFam Pectate lyase 56 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01460 Mepo-Chr1 14407369 14410027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01460 7 406 Polysaccharide Lyase AT5G63180 82.045 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01460 K01728 - gmx:100101868 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01460 1 14407369 14410027 Mepo3g05774 3 71925775 71928323 ECH
Mepo3g06272 3 76846462 76848272 Mepo1g01460 1 14407369 14410027 ECH
Mepo3g05774 3 71925775 71928323 Mepo1g01460 1 14407369 14410027 ECH
Mepo1g01460 1 14407369 14410027 Mepo1g01460 1 14407369 14410027 ECH
Mepo1g01460 1 14407369 14410027 Mepo3g05774 3 71925775 71928323 PCT