Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01455 ATGAAGAATGACTTCACCATCACCACCTTTCTCCACCTTCAACACAAACAAAACCCTATTTCCATTCTCAATTACCAATATCTCACTTCCATCAAAACCCTAACACCCCATATCACATGTCTCGCAGTCCACCGTAACCTTCTCTACGCCGCATCTCTCAACCTCATCAACGTCTTTGATCTCTCTTCCTCTCATTACACCCTCATTGACACCTTCAATGAAACCACCACTTCAGGTTTTGTCAAGTCTATCACCTTCAACGGTTCAAGAGTCTTCACTGCTCACCAAGACTGTAAAATTCGTGTATGGCTTATCACATCTTCAAAACGACACCGTCTAATATCTTCACTTCCAACCGTCAAAGACCGGTTGCGCCGCTGCATCGTCCCTAAAAACTACGTCAGCGTTCGACGTCACCGGAAGAGTCTTTGGATTCAACATAACGATACTGTATCAGGTTTAGCAGTAAACTCTAAAGAGAAACTCATGTACTCCGTTTCTTGGGATAAAACTTTGAAGATTTGGGACTTGTCTTCAGGTAATAACTGGTGTTTAGAGTCTTTCAACGCTCATGAAGACGCTATTAACGCTGTTGTTGTTTCTGACGACGGTGTCATTTACACGGCGTCAGCTGATGGGTGTATCAAGGTTTGGAAGATGGATGGTGATGATAAGGTGAAACGCTACGTGTTGGGGAGTATGATAGGGAAGCAGAAACCAGCCGTTAATGCGTTGGCATTGAACGGTCATGGTACAGTTTTGTTTTCAGGTGGGAGTGATGGTACGATTTGTCAGTGGGAGGAAAAAGAAAACGACATCGTGTTGAAGGAAACGTTGAGGGGTCATAGTGGAGCTATACTTTGTTTGGTCAACTTAGATGATTTGTTGGTGAGTGGGTCATCCGATCTAACGGTGAGGATTTGGCAGAGGGAAAAGGGGGGTGGTGGGTATTGTTGTAGAGGAGTGTTGGAAGGACATGAGAAACCGGTAAAGTCGTTGGTGGCAATTTCCGGTGGTGGTGAAGATGATGATGAGGTTGGGGATGGGATTGTTACGTTGTTTAGTGGAAGCCTTGATGAGCGTGAAAATGTTGCAACCAACGATGCTTTGGATTCTGAGGTAGCAGCTGGCTCGTCAAAGAAGAATCGGACAACTTCTGCTAATGCCAGTGCTTTGAAGCTTACCTGTGAACTTCTCCGGATTTTTGTTACAGAGGCTGTTCAGCGTGCTATTGCTATTGCAGAGACTGAGGGTGATGGTCAAATAGAAGCTACTCATTTGGAGAGCATTCTTCCTCAGTTGCTTTTAGATTTCTAA 1317 0.4465 MKNDFTITTFLHLQHKQNPISILNYQYLTSIKTLTPHITCLAVHRNLLYAASLNLINVFDLSSSHYTLIDTFNETTTSGFVKSITFNGSRVFTAHQDCKIRVWLITSSKRHRLISSLPTVKDRLRRCIVPKNYVSVRRHRKSLWIQHNDTVSGLAVNSKEKLMYSVSWDKTLKIWDLSSGNNWCLESFNAHEDAINAVVVSDDGVIYTASADGCIKVWKMDGDDKVKRYVLGSMIGKQKPAVNALALNGHGTVLFSGGSDGTICQWEEKENDIVLKETLRGHSGAILCLVNLDDLLVSGSSDLTVRIWQREKGGGGYCCRGVLEGHEKPVKSLVAISGGGEDDDEVGDGIVTLFSGSLDERENVATNDALDSEVAAGSSKKNRTTSANASALKLTCELLRIFVTEAVQRAIAIAETEGDGQIEATHLESILPQLLLDF 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01455 438 SMART WD40_4 181 219 IPR001680 GO:0005515
Mepo1g01455 438 SMART WD40_4 316 368 IPR001680 GO:0005515
Mepo1g01455 438 SMART WD40_4 138 176 IPR001680 GO:0005515
Mepo1g01455 438 SMART WD40_4 24 60 IPR001680 GO:0005515
Mepo1g01455 438 SMART WD40_4 227 267 IPR001680 GO:0005515
Mepo1g01455 438 SMART WD40_4 272 309 IPR001680 GO:0005515
Mepo1g01455 438 SMART WD40_4 65 104 IPR001680 GO:0005515
Mepo1g01455 438 SUPERFAMILY WD40 repeat-like 23 337 IPR036322 GO:0005515
Mepo1g01455 438 Gene3D - 234 374 IPR015943 GO:0005515
Mepo1g01455 438 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Mepo1g01455 438 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Mepo1g01455 438 PRINTS G protein beta WD-40 repeat signature 296 310 IPR020472 -
Mepo1g01455 438 Gene3D - 133 233 IPR015943 GO:0005515
Mepo1g01455 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 181 - -
Mepo1g01455 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 181 IPR001680 GO:0005515
Mepo1g01455 438 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Mepo1g01455 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Mepo1g01455 438 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 15 360 IPR045182 -
Mepo1g01455 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 221 - -
Mepo1g01455 438 Gene3D - 15 132 IPR015943 GO:0005515
Mepo1g01455 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 309 - -
Mepo1g01455 438 Pfam WD domain, G-beta repeat 146 176 IPR001680 GO:0005515
Mepo1g01455 438 Pfam WD domain, G-beta repeat 278 308 IPR001680 GO:0005515
Mepo1g01455 438 Pfam WD domain, G-beta repeat 236 266 IPR001680 GO:0005515
Mepo1g01455 438 Pfam WD domain, G-beta repeat 183 219 IPR001680 GO:0005515
Mepo1g01455 438 Gene3D - 397 438 - -
Mepo1g01455 438 Pfam CENP-S associating Centromere protein X 381 438 IPR018552 GO:0006281|GO:0051382
Mepo1g01455 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 309 IPR001680 GO:0005515
Mepo1g01455 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 228 IPR001680 GO:0005515
Mepo1g01455 438 FunFam BnaA09g28200D protein 134 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01455 Mepo-Chr1 14330296 14336373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01455 62 308 Eukaryotic Initiation Factors Gene Family AT2G46290 23.664 2.08e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01455 - - aprc:113874855 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01455 1 14330296 14336373 Mepo1g01455 1 14330296 14336373 ECH