Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01453 ATGTCTATCACTTCCTTCAAATCTCTAACTATGGCAGAATCATGCTTACTCTCTCAACCTTCACTCTTCTACACCAAATCCAAATCCCCATTCATCTCTAATTCCGCCAAACCCTTCAAGGTTGTAAACCCATTATACAATTCTTCAAAGCTTTCATCATCTGTCTCACTCGTTGCCAAGAGAAGAACCCGTCATTCTTCTTTGGTTACATTTGTTGCACAGACATCAGACTGGGCTCAACAGGAAGAGAAGGAAGACGGTGCTACATGGGAGAATCAAGCGGATGCTACATGGGTTGGTGAAACTGAAAGTAACGAGAGTGAAGTTGAAGTTCCGAGTTTTGAAGAACCTTCTGAAGATTTGAAGATTTTTGTTGGGAATTTGCCTTTTGATGTTGATAGTGAGAAATTGGCTCAGCTTTTTGAACAAACTGGGACTGTTGAGATTGCTGAGGTAATTTATAATAGGGACACGGACAGAAGTCGTGGGTTCGGATTTGTCACAATGAGTACCGCTGAAGAAGTTGAGAGAGCTGTGAACAAATTCAGTGGCTTTGAATTAGATGGAAGATTGTTGACGGTTAATAAGGCCGCTCCAAGAGGAGCACCACGGCCTGAGCGCCCACCACGTGCCTTTAGTTCCGGTTTAAGAGTCTATGTTGGTAACTTGCCATGGGACGTTGACAATTCTAGCTTGGAGCAACTTTTCAGCGAACATGGTAAGGTTGAGAGTGCTCGGGTAGTCTATGACAGAGAGACCGGTCGATCACGTGGTTTTGGCTTTGTTACAATGACCGATGAGGCTGAGATGAATGATGCCATTGCTGCTCTTGACGGTCAGAGCTTGGATGGGAGGGCAATTAGAGTGAATGTTGCTGAGGAAAGGCCCAGGCGCTCTTTCTGA 903 0.4485 MSITSFKSLTMAESCLLSQPSLFYTKSKSPFISNSAKPFKVVNPLYNSSKLSSSVSLVAKRRTRHSSLVTFVAQTSDWAQQEEKEDGATWENQADATWVGETESNESEVEVPSFEEPSEDLKIFVGNLPFDVDSEKLAQLFEQTGTVEIAEVIYNRDTDRSRGFGFVTMSTAEEVERAVNKFSGFELDGRLLTVNKAAPRGAPRPERPPRAFSSGLRVYVGNLPWDVDNSSLEQLFSEHGKVESARVVYDRETGRSRGFGFVTMTDEAEMNDAIAALDGQSLDGRAIRVNVAEERPRRSF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01453 300 SUPERFAMILY RNA-binding domain, RBD 208 298 IPR035979 GO:0003676
Mepo1g01453 300 FunFam 31 kDa ribonucleoprotein, chloroplastic 206 300 - -
Mepo1g01453 300 CDD RRM2_NsCP33_like 217 292 - -
Mepo1g01453 300 SMART rrm1_1 122 195 IPR000504 GO:0003723
Mepo1g01453 300 SMART rrm1_1 217 290 IPR000504 GO:0003723
Mepo1g01453 300 SUPERFAMILY RNA-binding domain, RBD 117 210 IPR035979 GO:0003676
Mepo1g01453 300 Gene3D - 71 204 IPR012677 -
Mepo1g01453 300 Gene3D - 205 299 IPR012677 -
Mepo1g01453 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 199 IPR000504 GO:0003723
Mepo1g01453 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 294 IPR000504 GO:0003723
Mepo1g01453 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 288 IPR000504 GO:0003723
Mepo1g01453 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 192 IPR000504 GO:0003723
Mepo1g01453 300 PANTHER OS02G0815200 PROTEIN 29 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01453 Mepo-Chr1 14320621 14323197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01453 123 298 Eukaryotic Initiation Factors Gene Family AT3G16380 34.946 2.81e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01453 - - gmx:100811487 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01453 1 14320621 14323197 Mepo3g05785 3 72040691 72043200 ECH
Mepo1g01453 1 14320621 14323197 Mepo1g01453 1 14320621 14323197 ECH
Mepo1g01453 1 14320621 14323197 Mepo3g05785 3 72040691 72043200 PCT