Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01423 ATGAACCCTTACGACAATAGATACTCCGATTCCACTTCTTTTCGCGGCCGTCGCAGTGATCTCGTTGGACCTATGCCGCCACCTAATTTCGGCCGCGGCGGTCCTGCTCCGTACGGTGCTGCTCCATATGCATCCCATGCACCGACTGGTTTCGGATCCGCTCCGGTTACCCCGATTCCTCACTTTTTACCACCTCCTGGAGGAGGTGGATTTAGCATAGGTCGCGGCGGTGGTGGAGGTGGTGGTTTTGGCCCTAGATTTGGCAACGGTCACGCGAGTGATAGAAAATATGATTCGGGGCGTGGTGGAAGAGGTGGTGGTGGCAGTGGTAGAGGTGGAACTCAAGGTTTTAGTGGTGGAAGAGGTCGCGTAGGTGGTGGTGGCAGAGGAGGAAGAGGTGGTGGATTTGGAGGTAGACATGGATCTTCTAAGGATGATTTGAACAACATTACACTTCCAAAGCAAGATTTTAGAAATTTGGTTCCTTTTCAGAAGAATTTCTATGTTGAAAGTCCTGTGATACAAGCCATGTCTGATCAGCAAGTTATGCAGTACCGTGCTAGTAGGGATATTACAGTTGAAGGGCATGATGTGCCGAAACCAATTCGGGCTTTTCACGAGGCGAATTTTCCTGATTACTGCCTTGACGTTATTGCCAAGTTGGGTTTTGTGGAGCCTACTCCAATTCAGGCTCAGGGTTGGCCCATGGCACTTACTGGTAGAGATTTAATTGGCATTGCTGAGACTGGATCGGGTAAAACTTTGTCGTATCTACTTCCTGCTATAGTTCATGTCAGTGCACAACCTCGATTAGTACAAGGGGACGGTCCTGTTGTCCTGGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAACAAGAAGCTATGAAATTTGGGTCACGATCAAATATTAGATGTACATGCATATATGGCGGTGCTCCAAAGGGCCCTCAAATTCGTGACCTTAGAATGGGTGTTGAGATTGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTGCAGAGAGTGACATACCTTGTCTTGGATGAAGCTGATCGAATGTTGGACATGGGTTTTGAACCTCAGATTCGGAAGATTGTAAACCAGATTCGACCAGATAGGCAGACATTATACTGGAGTGCAACATGGCCAAAGGAGGTTGAATCTCTGGCAAGGCAGTTTCTGCACAACCCATATAAGGTAGTTATTGGGTCACCATATCTGAAAGCAAATCAATCTATAAATCAAGTTGTCGAAGTTGTCACCGACATGGAGAAATATAACAGACTGATCAAGCTGCTGAAAGAAGTGATGGATGGGAGCCGAGTTCTAATATTTACAGAAACAAAAAAGGGATGTGACCAAGTTACTAGACAATTGAGAATGGATGGATGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAAAGGGATTGGGTTTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATAAAATGTGTGGTCAATTATGATTTTCCTTCAAGCCTCGAAGATTATGTCCATAGAATTGGTCGAACTGGTCGTGCAGGAGCTAAAGGAACTGCATATAGTTTTTTTACCAGTGCTAATGCAAAGTACGCTAGGGATTTGATTAAGATCTTACAAGATGCTGGTCAGATTGTTAGTCCTGCATTGTCTGCATTGACTCGGTCTGGTGGTTTTGGTCAACATGCATCAAGGGGAGGCTTTCGCTCAAGAGGACGAGGAGGAGGAGGCTATGGCAATCAGGGTTCAACATCAGGATCCAATGCCATTCCTGTAGGCGGGAAGAGGCCGTGGCAGTCTAGGTAG 1890 0.463 MNPYDNRYSDSTSFRGRRSDLVGPMPPPNFGRGGPAPYGAAPYASHAPTGFGSAPVTPIPHFLPPPGGGGFSIGRGGGGGGGFGPRFGNGHASDRKYDSGRGGRGGGGSGRGGTQGFSGGRGRVGGGGRGGRGGGFGGRHGSSKDDLNNITLPKQDFRNLVPFQKNFYVESPVIQAMSDQQVMQYRASRDITVEGHDVPKPIRAFHEANFPDYCLDVIAKLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLSYLLPAIVHVSAQPRLVQGDGPVVLVLAPTRELAVQIQQEAMKFGSRSNIRCTCIYGGAPKGPQIRDLRMGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVNQIRPDRQTLYWSATWPKEVESLARQFLHNPYKVVIGSPYLKANQSINQVVEVVTDMEKYNRLIKLLKEVMDGSRVLIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAYSFFTSANAKYARDLIKILQDAGQIVSPALSALTRSGGFGQHASRGGFRSRGRGGGGYGNQGSTSGSNAIPVGGKRPWQSR 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01423 629 MobiDBLite consensus disorder prediction 1 37 - -
Mepo1g01423 629 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 437 582 IPR001650 -
Mepo1g01423 629 FunFam probable ATP-dependent RNA helicase DDX17 165 412 - -
Mepo1g01423 629 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 203 231 IPR014014 GO:0003724
Mepo1g01423 629 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 182 580 - -
Mepo1g01423 629 FunFam ATP-dependent RNA helicase RhlB 413 585 - -
Mepo1g01423 629 CDD SF2_C_DEAD 422 552 - -
Mepo1g01423 629 SMART helicmild6 462 543 IPR001650 -
Mepo1g01423 629 MobiDBLite consensus disorder prediction 586 629 - -
Mepo1g01423 629 Gene3D - 414 584 IPR027417 -
Mepo1g01423 629 MobiDBLite consensus disorder prediction 55 150 - -
Mepo1g01423 629 SMART ultradead3 222 425 IPR014001 -
Mepo1g01423 629 CDD DEADc_DDX5_DDX17 215 410 - -
Mepo1g01423 629 Pfam DEAD/DEAH box helicase 227 397 IPR011545 GO:0003676|GO:0005524
Mepo1g01423 629 Pfam Helicase conserved C-terminal domain 433 543 IPR001650 -
Mepo1g01423 629 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 234 409 IPR014001 -
Mepo1g01423 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 563 IPR027417 -
Mepo1g01423 629 Gene3D - 167 413 IPR027417 -
Mepo1g01423 629 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 355 363 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01423 Mepo-Chr1 14066244 14071082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01423 191 563 Eukaryotic Initiation Factors Gene Family AT3G19760 35.561 1.84e-69 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01423 K12823 - gmx:100817092 907.131