Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01394 ATGGTTTTCGACACAAATCTCAGAGAAAACTATCCCTCACAATCACAACCAATGCATTTGCAAGAAAACTACCTGAAACCAAGGCTGAAAGATGAGCTAAATCCATTTAGTGCTCATTCCTGTCATGGTAATTTCTTACAAGATTTTCAGCATATTGATCAGTTTCATCATGTGCATGGATCATCATCCTCCAATCAAGTTTTTGGGGTCCAAACTCAAAACTTTGATCTTTTTGGTAATGCAGAATGTGCAAATACAGATTTTGATGTTTATGATGGAAAGTCTTTTGCTGAGAATAATAGTGGTAGTGAGCATGCTCATAACCTTATTGACAATTTTCAGTATGATGGTTTTAGTTTGAATGCTAGAAGAAATCAACTTGATCTTATGGTTGAAAACCATAGTTATTTTTCCTTCAATAATCCTTCAGAAACCAAGTCATTGAGTTATGTTGTACCTGAGGATGAAGTTTCAAGCATAGCCCCGACAAATTATTACCAAAGAGCTGGATTGAATAGAAACAACGGGTTGTTATCTCCTACGACAAGAAGAGCATTTAAAGCGAAGAAGAAAACAATCATAGTGAAGGGGCAATGGACAGTGGAAGAAGATAGATTGTTGAGTCAAATGGTGGAACAATATGGAATAAGGAAGTGGTCTCATATTGCTCAGAAGTTACCTGGAAGAATAGGGAAACAGTGCAGAGAAAGATGGCATAACCATTTAAGGCCTGACATAAAGAAAGACATATGGACAGATGAAGAGGATAAGATATTGATCCAAGCTCATACAGAGATAGGAAATAAGTGGGCAGAGATTGCGAAAAGATTGCCAGGAAGAACTGAGAATGCAATAAAAAACCATTGGAATGCAACAAAGAGAAGGCAATATTCCAAAAGAACATGTCGTTCGAAGTATCCAAGAGGCACTCTTCTGCAAGAATATATCAAAAGCCTGAATTTGGATCAAAACCCGCCAAGAGACTTTCGAAAAAGATCTTTTGTTAATGCCAAGAAAAAGATTACTTGTAGCACAAGCAAAGCCGCAACACAGATTCCCCAGCCACATATTGCAGATCAATTTTGCCCTAATGACCGCTCGGTGCCAAACTATGAGTTCAATGATTTTTCTTTGGATGATAATTTGTTTGGAGAAGAGTGTGGTATTGATTCTCTGCTAGATGATATGTCAAGTGTTCCTACTATGGATGAAAAAGAATGTGATAAGGGAGGCATGGAAGTTGTTAATCTTGATGAGCATCAATTAGAGAAAGAGGTTGAAGTTAAGAAGGAGTTGGATTTGGTGGAGATGATCTCTCAGGCTAATCAAAATATTAATTGA 1341 0.3729 MVFDTNLRENYPSQSQPMHLQENYLKPRLKDELNPFSAHSCHGNFLQDFQHIDQFHHVHGSSSSNQVFGVQTQNFDLFGNAECANTDFDVYDGKSFAENNSGSEHAHNLIDNFQYDGFSLNARRNQLDLMVENHSYFSFNNPSETKSLSYVVPEDEVSSIAPTNYYQRAGLNRNNGLLSPTTRRAFKAKKKTIIVKGQWTVEEDRLLSQMVEQYGIRKWSHIAQKLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHTEIGNKWAEIAKRLPGRTENAIKNHWNATKRRQYSKRTCRSKYPRGTLLQEYIKSLNLDQNPPRDFRKRSFVNAKKKITCSTSKAATQIPQPHIADQFCPNDRSVPNYEFNDFSLDDNLFGEECGIDSLLDDMSSVPTMDEKECDKGGMEVVNLDEHQLEKEVEVKKELDLVEMISQANQNIN 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01394 446 PANTHER MYB PROTEIN-RELATED 196 343 - -
Mepo1g01394 446 FunFam Transcription factor MYB119 249 313 - -
Mepo1g01394 446 Gene3D - 195 248 - -
Mepo1g01394 446 Pfam Myb-like DNA-binding domain 251 290 IPR001005 -
Mepo1g01394 446 Pfam Myb-like DNA-binding domain 196 242 IPR001005 -
Mepo1g01394 446 CDD SANT 199 242 IPR001005 -
Mepo1g01394 446 ProSiteProfiles Myb-like domain profile. 191 242 IPR001005 -
Mepo1g01394 446 SUPERFAMILY Homeodomain-like 195 289 IPR009057 -
Mepo1g01394 446 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 246 IPR017930 -
Mepo1g01394 446 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 247 297 IPR017930 -
Mepo1g01394 446 SMART sant 195 244 IPR001005 -
Mepo1g01394 446 SMART sant 247 295 IPR001005 -
Mepo1g01394 446 CDD SANT 251 293 IPR001005 -
Mepo1g01394 446 Gene3D - 250 310 - -
Mepo1g01394 446 ProSiteProfiles Myb-like domain profile. 243 293 IPR001005 -
Mepo1g01394 446 FunFam Transcriptional activator Myb isoform A 195 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01394 Mepo-Chr1 13773226 13775090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01394 142 396 MYB Transcription Factor Family AT4G18770 54.104 2.04e-87 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo1g01394 Myb_DNA-binding 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01394 K09422 - gmx:100816653 539.265