Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01381 ATGCTACTAGCACCAAATAAATCGTGTCAAGCCCTTTCATTTTCTCAGCCAGAACAACCACCATGTCTTCCTCCCAAACAACTCAACAACCTCCTCCACCGTCGCCACCTTCTCACCACAACCGCATTCACCATCTCCTTCAACTTCAACATCTCTTCCAAAACCTCACTTCCCATTTCAGAACCAGTGGCCATTGCCAGTGGACTCTTCATCATGCCCCCACCACGCCTTAAAAACCAGTACTATCTTGTGAGGTCTGGAGAATCAGAGTTTGAGAGCATGGGAGTGATAAACACCAACCCTGTGGCTAAGACTTCTGTGGATAATGGTTTATCTGATAGAGGGAAGAAACAGAGTATTAGAGCTGCTTTTGATTTGAAAGAAATGGGTGCTTGTGATAATAATTGTTGGATTTGGCCTGCTATTACTCAGAGAGCTTATCAAACTGCTGAGATTATTGCTTCTGTTAATTCTATTACTAGAAGTTATATTGTTCCGGAATACAGCTTTCTTGATGCACGGGGATTAGGTGCTTATGAAGGAAAAACATTAGAATATGTTTCAGAAATATATGCATCAGATGGTATATCTACAAAAATAAAACCTCCTCCCATTGATGACGGAACTCCAAACGAGAGTGTTGCAGATGTTTTTGTTCGTGTGACCCAACTCATGTCAATCCTTGAAACTCAATACGCTGGTGATACAGTCGTTATAGTCTCACCAGATTCCGATAACTTATCAATCCTTCAGGCTGGTCTGGTAGGACTAGACTTGCGAAGGCATAGGGAGTTGTCTTTTGCACCTGGTGAAGTTCGCTATGTTGATTCCAATGACATTCCTACTTACAAGATGCCTCCGTCTGCTGTACGATGGATTTTTCTTGTCCATGCTTGCCACCAGCGTGTGGACTACACTGCTGTGTTCGTTTTCCGGCTCTTGATGTTTGTTGATAACGGCTTTGCTTCCGGAATGGGCTTGGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTGGTTGTCCTTTCAATCCTTGGATTGCTTCTTTATCCATTTCTTTGGGCTTGGACTATAATTGGTACCATGTGGTTCAGCAGTGCCAAGAGCTGTTTGCCTGAAGAGGGACAGAAATGGGGATTCCTCATCTGGTTACTTTTTAGCTACTGTGGACTTCTTTGTATTGCTTGCATGTCAGTAGGGAAGTGGTTGACTCGACGACAAGCACACTTAGTGCGTGCCCAACAGGGTATCCCTCTGTCTGAATATGGGATTTTGGTGGATATGATTCGCGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGGGCATGGGCCAGGATACTGCTTCATATCATCCAGGACTTTACCTAACACCAGCTCAGAGAGAAGCAGTCGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTGAAGGCTGTTCCTACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCCGTGTTGGGAATGAGGTTCGTGGCTTGCCTTGTGCGCACAATTTTCATGTTGAATGCATTGACGAGTGGCTTAGGCTGAATGTGAAGTGTCCTAGGTGCCGTTGCTCAGTGTTCCCAAATCTTGATCTTAGTGCCCTGTCCAATCTCCGTCCTGATTCTGAACGGTCTTCTGCCAGTGTTGTGACAACAACTAGATACGTGAGAGGTCAACCTTCTAGTCAAAGTTACCTGTTAAGGTTACAGGGGCTTCTCCGCCCTGTGCGTGCTGAAATTGCAGGGCCAGTTGGTGACACAGATAATGCTTTGCAAAATGCTGAGAACGGTGTTGCACCTGTTTTGACACAAAATGCACCAAACAGAGTCCAGGTCTCGTCGGTGGAATGCATGCCTGTCAGTCTTTCTTCTGCACAAAGTTAG 1914 0.4535 MLLAPNKSCQALSFSQPEQPPCLPPKQLNNLLHRRHLLTTTAFTISFNFNISSKTSLPISEPVAIASGLFIMPPPRLKNQYYLVRSGESEFESMGVINTNPVAKTSVDNGLSDRGKKQSIRAAFDLKEMGACDNNCWIWPAITQRAYQTAEIIASVNSITRSYIVPEYSFLDARGLGAYEGKTLEYVSEIYASDGISTKIKPPPIDDGTPNESVADVFVRVTQLMSILETQYAGDTVVIVSPDSDNLSILQAGLVGLDLRRHRELSFAPGEVRYVDSNDIPTYKMPPSAVRWIFLVHACHQRVDYTAVFVFRLLMFVDNGFASGMGLDFGWQQRYARFCGRVVVLSILGLLLYPFLWAWTIIGTMWFSSAKSCLPEEGQKWGFLIWLLFSYCGLLCIACMSVGKWLTRRQAHLVRAQQGIPLSEYGILVDMIRVPDWAFEAAGQETRGMGQDTASYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDSERSSASVVTTTRYVRGQPSSQSYLLRLQGLLRPVRAEIAGPVGDTDNALQNAENGVAPVLTQNAPNRVQVSSVECMPVSLSSAQS 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01381 637 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 302 616 IPR044793 GO:0004842|GO:0010182
Mepo1g01381 637 Gene3D - 76 284 IPR029033 -
Mepo1g01381 637 Pfam Histidine phosphatase superfamily (branch 1) 82 276 IPR013078 -
Mepo1g01381 637 ProSiteProfiles Zinc finger RING-type profile. 492 533 IPR001841 -
Mepo1g01381 637 FunFam E3 ubiquitin-protein ligase SIS3 460 538 - -
Mepo1g01381 637 Pfam Ring finger domain 491 533 IPR001841 -
Mepo1g01381 637 SMART ring_2 492 532 IPR001841 -
Mepo1g01381 637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 538 IPR013083 -
Mepo1g01381 637 SUPERFAMILY RING/U-box 474 541 - -
Mepo1g01381 637 SUPERFAMILY Phosphoglycerate mutase-like 81 279 IPR029033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01381 Mepo-Chr1 13633954 13643330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01381 315 619 C3H Transcription Factor Family AT3G47990 74.757 3.55e-162 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01381 K16284 - gmx:100812016 615.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01381 1 13633954 13643330 Mepo1g01381 1 13633954 13643330 ECH