Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01377 ATGACTAGTACTCATGCTTCTAATCAAAGGGATCGCCGCATCCTATCATTCCCGGCGGTTCACCCTTGCGAAAACATATCTCCCACAACACTCATCACTTCTCTAATCACTCTTTCACAAACTATATCCAATTTCCAACCTCAAATATTCCCAACTCAAAAACGTAACGCTAGAGAAACTATACGTCAAATAAGTATAATTTCAATTTTCCTCAACGAAGTTAAAGACCATGGTTCCATTATTCCTAACTCAATTATCCTATGTTTTTCAGAACTTCACTTTACTCTACAAAAGATTCATTTCTTAATGCAAGATTGTACTACTTTAGAAGGTTCTAGTCTCTTATTGCTCGCGAAATCCCACCACGTGGCGTCTCAGTTTCGTTCTCTTATTCGCGCAGTGGCTATTACACTAGACATTTTGCCTTTACACAGAGTCGAAATTTGCGACGAAGTGAAGGAGTTAGTTGAATTGGTAGCTAAACAAGCGAGGAAAAGTAACTTCGAAGTGGACCCCAACGATGAGGTTGCGTCCAAGAAACTTCATTATGTTCTGCATCAATTCGAGAAAGGAACTGAACCTAACGTGAATACCATGAATGAAATCCTTGATTACCTCAAAATCAGGACCTGGAATGATTGTGACAGAGAAATTAAATTCTTAGAAAACGAGATAAGTTTCTTGGAGGATAGGAACTGCGACGAACGAGAGGTTCCCTTGTTGAGTTCTTTAATTGGGTTTTTAAGCTACTGTAGGGTAGTGATATTCGAAGATTTTGGTGAAAATTTGGTTAAGCTCGAAGCTCGACGCAGCACAGAGATGATAACTGTAAATTGTTTGAATCCAGACGATTTTCGGTGTCCAATTTCACTCGAATTAATGACTGATCCAGTAACAGTTTCAACAGGACAAACCTACGATCGTGCTTCAATTCAGACATGGCTTAAAGCAGGAAACACAACATGCCCCAAAACAGGGGAGAATATTAAAAACACAGAGTTAGTCCCAAACACAACATTGAAGAGACTTATCCAACAATTCTGCAATGATAATGGTATTTCATTCACAAGATTTTCAAACCGTAACCGTGACATAACGAGGACAATTTTACCCGGTAGTTCTGCAGCAGCACATGCTATGCAGTTTCTGTCATGGTTTCTAACACGAAGGCTCGTGTTTGGAACAGAACAACAGAAGAACAAAGCAGCTTACGAGATTCGTTTGTTAACAAGGTCAACCATTTTCAACAGAGCTTGTTTGATTGAAGTTGGAACTGTGCCACCACTCTTGGAACTTTTAGCTACGGAGGATAAAACCACTCAAGAAAATGCAATCTCTGCTTTGTTGAAGCTTTCAAAGTATGCAACCGGGCCTGAACATATAATCGACCATAACGGTTTAAAGCCCGTTGTGTATGTGTTGAAAAATGGCCTTAGTCTTGAAGCTCGTCAAATTGCAGCTGCTATAATATTCTATCTTTGTTCAGTGAAAGAATACAGAAAATTAATAGGTGAAAATCAAGATGTGATTTATGGCTTAGTTGAATTGGCTAAAGAAGGAACAACCTGCGGGAAAAAGAATGCAGTGGTTGCGATTTTTGGACTTCTTTTGCTTCCTAGGAATCATCAACGTGTGCTTGAAGCAGGTGCTGTTCCCGCGCTTGTTTCTATTTTGAATACCTTGTGCAACAAGGAAGAGCTGGTTACTGAAACTTTGGCTGTTCTTGCGGCACTTGCTGAGAATTTTGATGGAGCTAATGCTGTTTTGGAAGCTTCTGTGTTGCCGTTGATTACTGGGCTGTTGCGATCTGCTCCTTCGCGTGCTGCAAAGGAACATTGTGTTTCGATATTGTTGTCTCTATGTGTTAATGGTGGTGTGGATGTTGCTGGTGTTCTTGCTAAGAATGTTACACTTATGCCTTTGCTCTATTCGCTTCTTACTGATGGTACTTCTCATGCTGCTAAGAAAGCGCGTTTTCTCATTAAAGTTCTGCAGGATTTCAATGAAACTGCAACTTCTGGATTGAAAGGTTCCGCAATTCTACGCCAATTGAATGTGTTGGAACTTAGAAATTAG 2076 0.4008 MTSTHASNQRDRRILSFPAVHPCENISPTTLITSLITLSQTISNFQPQIFPTQKRNARETIRQISIISIFLNEVKDHGSIIPNSIILCFSELHFTLQKIHFLMQDCTTLEGSSLLLLAKSHHVASQFRSLIRAVAITLDILPLHRVEICDEVKELVELVAKQARKSNFEVDPNDEVASKKLHYVLHQFEKGTEPNVNTMNEILDYLKIRTWNDCDREIKFLENEISFLEDRNCDEREVPLLSSLIGFLSYCRVVIFEDFGENLVKLEARRSTEMITVNCLNPDDFRCPISLELMTDPVTVSTGQTYDRASIQTWLKAGNTTCPKTGENIKNTELVPNTTLKRLIQQFCNDNGISFTRFSNRNRDITRTILPGSSAAAHAMQFLSWFLTRRLVFGTEQQKNKAAYEIRLLTRSTIFNRACLIEVGTVPPLLELLATEDKTTQENAISALLKLSKYATGPEHIIDHNGLKPVVYVLKNGLSLEARQIAAAIIFYLCSVKEYRKLIGENQDVIYGLVELAKEGTTCGKKNAVVAIFGLLLLPRNHQRVLEAGAVPALVSILNTLCNKEELVTETLAVLAALAENFDGANAVLEASVLPLITGLLRSAPSRAAKEHCVSILLSLCVNGGVDVAGVLAKNVTLMPLLYSLLTDGTSHAAKKARFLIKVLQDFNETATSGLKGSAILRQLNVLELRN 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01377 691 SUPERFAMILY ARM repeat 395 664 IPR016024 -
Mepo1g01377 691 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Mepo1g01377 691 Pfam Armadillo/beta-catenin-like repeat 416 452 IPR000225 GO:0005515
Mepo1g01377 691 SUPERFAMILY RING/U-box 282 355 - -
Mepo1g01377 691 Gene3D - 358 683 IPR011989 -
Mepo1g01377 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 549 593 IPR000225 GO:0005515
Mepo1g01377 691 Coils Coil 211 231 - -
Mepo1g01377 691 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Mepo1g01377 691 PANTHER U BOX DOMAIN-CONTAINING 57 664 - -
Mepo1g01377 691 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Mepo1g01377 691 FunFam RING-type E3 ubiquitin transferase 361 675 - -
Mepo1g01377 691 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Mepo1g01377 691 SMART arm_5 538 580 IPR000225 GO:0005515
Mepo1g01377 691 SMART arm_5 581 622 IPR000225 GO:0005515
Mepo1g01377 691 SMART arm_5 454 495 IPR000225 GO:0005515
Mepo1g01377 691 SMART arm_5 412 453 IPR000225 GO:0005515
Mepo1g01377 691 CDD RING-Ubox_PUB 282 334 IPR045210 -
Mepo1g01377 691 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 424 466 IPR000225 GO:0005515
Mepo1g01377 691 FunFam RING-type E3 ubiquitin transferase 280 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01377 Mepo-Chr1 13612288 13614638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g01377 5 673 U-box Gene Family AT1G60190 40.206 2.84e-169 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01377 - - tpra:123884536 1089.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01377 1 13612288 13614638 Mepo1g01377 1 13612288 13614638 ECH