Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g01362 ATGGCATCATTTGCAGGCACTACACAGAAATGTAATACATGTGAAAAGAAAGTCTACTGGGTGGAACAGCTCACTGCTGATAACAAAGTGTTCCACAAGTCTTGCTTCAGATGCCACCATTGCAAGGGCACACTCAAGCTGAGTAACTATTGTTCCTTTGAGGGTGTTCTATATTGCAAGCCTCATTTTAATCAACTCTTTAAGATGACTGGCAGTTTGGACAAAAGTTTTGAAGGTATTGCAAGAATTTATAGAGTTGAAAGATCTACTGATCAGGTCCAAGCATATAACAAGGTTTCAAGGTTTTTTGCTGGAACTCAAGAAAAATGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTAGCTGTTGATGGAGAATCTTACCATAAGATTTGCTTCAGGTGCACACATGGAGGTTGTATAATCAGTCCATCAAACTATGTGGCACATGAACATCGCCTTTATTGTAGACATCACCATACTCAGATCTTCAAACAGAAGGGTAATTTCAGCCAATTTGATAAGGTTGAACTAGTCCAAGGGATGATTGAGAACACAACATCTCAGTTATTATAA 582 0.3866 MASFAGTTQKCNTCEKKVYWVEQLTADNKVFHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHFNQLFKMTGSLDKSFEGIARIYRVERSTDQVQAYNKVSRFFAGTQEKCVGCKKTVYPIEKVAVDGESYHKICFRCTHGGCIISPSNYVAHEHRLYCRHHHTQIFKQKGNFSQFDKVELVQGMIENTTSQLL 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g01362 193 Pfam LIM domain 110 164 IPR001781 -
Mepo1g01362 193 Pfam LIM domain 11 66 IPR001781 -
Mepo1g01362 193 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Mepo1g01362 193 Gene3D Cysteine Rich Protein 5 75 - -
Mepo1g01362 193 Gene3D Cysteine Rich Protein 104 174 - -
Mepo1g01362 193 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Mepo1g01362 193 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Mepo1g01362 193 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Mepo1g01362 193 FunFam LIM domain and actin-binding 1 5 75 - -
Mepo1g01362 193 CDD LIM2_SF3 110 170 - -
Mepo1g01362 193 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Mepo1g01362 193 PANTHER OS06G0237300 PROTEIN 2 79 - -
Mepo1g01362 193 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Mepo1g01362 193 FunFam LIM domain and actin-binding 1 104 174 - -
Mepo1g01362 193 SMART lim_4 10 62 IPR001781 -
Mepo1g01362 193 SMART lim_4 109 161 IPR001781 -
Mepo1g01362 193 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g01362 Mepo-Chr1 13490521 13494416 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Mepo1g01362 LIM 6e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g01362 K09377 - gmx:100792627 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01362 1 13490521 13494416 Mepo1g01362 1 13490521 13494416 ECH